LINC03080

Summary

LINC03080 (long intergenic non-protein coding RNA 3080, HGNC:56670) is a long non-coding RNA gene on chromosome 15q26.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56670
Approved symbol	LINC03080
Name	long intergenic non-protein coding RNA 3080
Location	15q26.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC015660.1
Ensembl gene	ENSG00000259341
Ensembl biotype	lncRNA
Entrez	124903562
RNAcentral	URS0000EF38B8 — lncRNA, 11392 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000560103, ENST00000653247, ENST00000813862, ENST00000813863, ENST00000813864, ENST00000813865, ENST00000813866, ENST00000813867, ENST00000813868, ENST00000813869, ENST00000813870, ENST00000813871

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000560103 — 2 exons

Exon	Start	End
ENSE00002563483	99427009	99427202
ENSE00002568275	99430828	99431028

Expression profiles

Bgee: expression breadth broad, 86 present calls, max score 63.30.

Top tissues by expression

86 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
skeletal muscle tissue	UBERON:0001134	63.30	silver quality
skin of leg	UBERON:0001511	63.21	gold quality
zone of skin	UBERON:0000014	62.80	gold quality
skin of abdomen	UBERON:0001416	61.69	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	58.70	gold quality
placenta	UBERON:0001987	57.23	gold quality
vermiform appendix	UBERON:0001154	54.79	gold quality
blood	UBERON:0000178	54.61	gold quality
superior frontal gyrus	UBERON:0002661	54.02	gold quality
heart left ventricle	UBERON:0002084	53.08	gold quality
gall bladder	UBERON:0002110	52.30	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	52.15	gold quality
esophagus mucosa	UBERON:0002469	51.54	gold quality
tonsil	UBERON:0002372	51.47	gold quality
mucosa of transverse colon	UBERON:0004991	51.41	gold quality
multicellular organism	UBERON:0000468	51.22	gold quality
transverse colon	UBERON:0001157	51.16	gold quality
heart	UBERON:0000948	51.11	gold quality
esophagus	UBERON:0001043	51.03	gold quality
endometrium	UBERON:0001295	50.83	gold quality
left coronary artery	UBERON:0001626	50.65	gold quality
prefrontal cortex	UBERON:0000451	50.45	gold quality
muscle of leg	UBERON:0001383	50.09	gold quality
colon	UBERON:0001155	49.56	gold quality
gastrocnemius	UBERON:0001388	49.53	gold quality
primary visual cortex	UBERON:0002436	49.13	gold quality
stomach	UBERON:0000945	47.81	gold quality
apex of heart	UBERON:0002098	47.66	gold quality
tibial artery	UBERON:0007610	47.35	gold quality
body of stomach	UBERON:0001161	47.04	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.16

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.