LINC03088

Summary

LINC03088 (long intergenic non-protein coding RNA 3088, HGNC:56710) is a long non-coding RNA gene on chromosome 12q24.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56710
Approved symbol	LINC03088
Name	long intergenic non-protein coding RNA 3088
Location	12q24.22
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC125603.2
Ensembl gene	ENSG00000257883
Ensembl biotype	lncRNA
Entrez	124903027
RNAcentral	URS0002A647CA — lncRNA, 1616 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000546835, ENST00000552718, ENST00000730135, ENST00000730136, ENST00000730137

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000546835 — 2 exons

Exon	Start	End
ENSE00004058368	116697855	116698502
ENSE00004058371	116661486	116662246

Expression profiles

Bgee: expression breadth broad, 91 present calls, max score 80.97.

Top tissues by expression

91 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.97	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.85	gold quality
tonsil	UBERON:0002372	57.58	silver quality
skeletal muscle tissue	UBERON:0001134	55.36	gold quality
urinary bladder	UBERON:0001255	54.29	gold quality
small intestine	UBERON:0002108	53.90	gold quality
small intestine Peyer’s patch	UBERON:0003454	53.13	gold quality
duodenum	UBERON:0002114	53.07	gold quality
lymph node	UBERON:0000029	52.41	gold quality
bone marrow	UBERON:0002371	52.19	silver quality
sural nerve	UBERON:0015488	51.90	silver quality
liver	UBERON:0002107	50.76	silver quality
blood	UBERON:0000178	50.63	gold quality
thoracic mammary gland	UBERON:0005200	50.30	gold quality
adipose tissue	UBERON:0001013	49.96	gold quality
subcutaneous adipose tissue	UBERON:0002190	49.92	gold quality
omental fat pad	UBERON:0010414	49.56	gold quality
muscle of leg	UBERON:0001383	49.27	silver quality
monocyte	CL:0000576	49.25	silver quality
islet of Langerhans	UBERON:0000006	48.74	gold quality
adult mammalian kidney	UBERON:0000082	48.60	gold quality
gastrocnemius	UBERON:0001388	48.55	silver quality
saliva-secreting gland	UBERON:0001044	48.53	gold quality
prefrontal cortex	UBERON:0000451	48.24	silver quality
intestine	UBERON:0000160	48.20	gold quality
gall bladder	UBERON:0002110	48.16	gold quality
right lobe of liver	UBERON:0001114	48.11	silver quality
kidney	UBERON:0002113	48.03	gold quality
pancreas	UBERON:0001264	47.71	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.40	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.