LINC03089

Summary

LINC03089 (long intergenic non-protein coding RNA 3089, HGNC:56717) is a long non-coding RNA gene on chromosome 10q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56717
Approved symbol	LINC03089
Name	long intergenic non-protein coding RNA 3089
Location	10q11.21
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-20J15.2
Ensembl gene	ENSG00000237590
Ensembl biotype	lncRNA
Entrez	128385371
RNAcentral	URS000000E978 — lncRNA, 841 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000437014

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000437014 — 2 exons

Exon	Start	End
ENSE00001704778	44259602	44260145
ENSE00001778540	44261517	44261813

Expression profiles

Bgee: expression breadth broad, 40 present calls, max score 94.17.

Top tissues by expression

40 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
liver	UBERON:0002107	94.17	silver quality
stromal cell of endometrium	CL:0002255	56.10	gold quality
gall bladder	UBERON:0002110	53.40	gold quality
tonsil	UBERON:0002372	53.22	gold quality
islet of Langerhans	UBERON:0000006	50.76	gold quality
lymph node	UBERON:0000029	49.45	gold quality
saliva-secreting gland	UBERON:0001044	48.56	gold quality
prefrontal cortex	UBERON:0000451	48.28	gold quality
vermiform appendix	UBERON:0001154	48.02	gold quality
muscle of leg	UBERON:0001383	46.99	gold quality
gastrocnemius	UBERON:0001388	46.20	gold quality
body of pancreas	UBERON:0001150	45.71	gold quality
smooth muscle tissue	UBERON:0001135	45.07	gold quality
blood	UBERON:0000178	43.67	silver quality
frontal cortex	UBERON:0001870	43.35	silver quality
ovary	UBERON:0000992	42.58	silver quality
esophagus	UBERON:0001043	41.80	gold quality
cerebral cortex	UBERON:0000956	41.66	silver quality
spleen	UBERON:0002106	41.55	silver quality
urinary bladder	UBERON:0001255	41.27	silver quality
right coronary artery	UBERON:0001625	41.16	silver quality
muscle layer of sigmoid colon	UBERON:0035805	41.12	silver quality
subcutaneous adipose tissue	UBERON:0002190	41.07	silver quality
rectum	UBERON:0001052	40.94	silver quality
adipose tissue	UBERON:0001013	40.45	silver quality
tibial artery	UBERON:0007610	40.33	silver quality
small intestine	UBERON:0002108	40.01	silver quality
ascending aorta	UBERON:0001496	39.84	silver quality
omental fat pad	UBERON:0010414	39.38	silver quality
zone of skin	UBERON:0000014	39.13	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.