LINC03090

Summary

LINC03090 (long intergenic non-protein coding RNA 3090, HGNC:56719) is a long non-coding RNA gene on chromosome 8q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56719
Approved symbol	LINC03090
Name	long intergenic non-protein coding RNA 3090
Location	8q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000253355
Ensembl biotype	lncRNA
Entrez	105375675
RNAcentral	URS0002A62746 — lncRNA, 1304 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 15 lncRNA, 1 retained_intron

ENST00000518090, ENST00000520411, ENST00000521884, ENST00000716482, ENST00000716483, ENST00000716484, ENST00000716485, ENST00000716486, ENST00000716487, ENST00000716488, ENST00000716489, ENST00000716490, ENST00000716491, ENST00000746417, ENST00000746418, ENST00000746419

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000518090 — 6 exons

Exon	Start	End
ENSE00002093548	101139632	101139751
ENSE00002098557	101140660	101140929
ENSE00002103667	101139865	101139980
ENSE00004029901	101133032	101133128
ENSE00004029904	101125016	101125160
ENSE00004029908	101133383	101133619

Expression profiles

Bgee: expression breadth broad, 92 present calls, max score 71.81.

Top tissues by expression

92 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	71.81	silver quality
monocyte	CL:0000576	65.95	gold quality
leukocyte	CL:0000738	64.97	gold quality
myometrium	UBERON:0001296	60.86	gold quality
skeletal muscle tissue	UBERON:0001134	60.67	gold quality
prefrontal cortex	UBERON:0000451	58.15	gold quality
islet of Langerhans	UBERON:0000006	55.37	gold quality
placenta	UBERON:0001987	53.87	gold quality
gall bladder	UBERON:0002110	53.66	gold quality
blood	UBERON:0000178	53.63	gold quality
vermiform appendix	UBERON:0001154	53.16	gold quality
muscle of leg	UBERON:0001383	52.30	gold quality
cortex of kidney	UBERON:0001225	51.11	gold quality
gastrocnemius	UBERON:0001388	51.04	gold quality
primary visual cortex	UBERON:0002436	50.59	gold quality
substantia nigra	UBERON:0002038	50.17	gold quality
small intestine	UBERON:0002108	49.59	gold quality
superior frontal gyrus	UBERON:0002661	49.54	gold quality
endometrium	UBERON:0001295	49.14	gold quality
frontal cortex	UBERON:0001870	49.08	gold quality
hypothalamus	UBERON:0001898	49.02	gold quality
small intestine Peyer’s patch	UBERON:0003454	48.91	gold quality
right hemisphere of cerebellum	UBERON:0014890	48.90	gold quality
right atrium auricular region	UBERON:0006631	48.69	gold quality
tonsil	UBERON:0002372	48.63	gold quality
cerebellum	UBERON:0002037	48.38	gold quality
cerebellar cortex	UBERON:0002129	48.28	gold quality
cerebellar hemisphere	UBERON:0002245	48.22	gold quality
granulocyte	CL:0000094	48.08	silver quality
heart	UBERON:0000948	47.88	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.