LINC03091

Summary

LINC03091 (long intergenic non-protein coding RNA 3091, HGNC:56720) is a long non-coding RNA gene on chromosome 4p16.2.

At a glance

• Clinical variants (ClinVar): 1 total

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56720
Approved symbol	LINC03091
Name	long intergenic non-protein coding RNA 3091
Location	4p16.2
Locus type	RNA, long non-coding
Status	Approved
Entrez	101928237

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

1 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	1
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000036579 (4:4565890 A>C), RS1000075602 (4:4563941 C>T), RS1000164501 (4:4582093 C>G), RS1000374096 (4:4576624 C>A), RS1000399473 (4:4582549 G>A), RS1000451577 (4:4580757 T>A), RS10005195 (4:4583517 A>G), RS1000675886 (4:4575468 G>A), RS1000877657 (4:4561085 G>A), RS10009069 (4:4561030 C>T), RS1001080317 (4:4562748 G>A), RS10012509 (4:4580456 A>G,T), RS1001399893 (4:4569340 T>C), RS1001402123 (4:4575437 G>A), RS1001512494 (4:4563883 GC>G)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.