LINC03092

Summary

LINC03092 (long intergenic non-protein coding RNA 3092, HGNC:56721) is a long non-coding RNA gene on chromosome 18q21.2.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56721
Approved symbol	LINC03092
Name	long intergenic non-protein coding RNA 3092
Location	18q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267327
Entrez	107985164

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Bgee: expression breadth ubiquitous, 111 present calls, max score 80.32.

Top tissues by expression

111 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.32	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	71.98	gold quality
placenta	UBERON:0001987	68.60	gold quality
ganglionic eminence	UBERON:0004023	67.53	gold quality
calcaneal tendon	UBERON:0003701	66.31	gold quality
cortical plate	UBERON:0005343	65.27	gold quality
corpus callosum	UBERON:0002336	61.39	gold quality
smooth muscle tissue	UBERON:0001135	61.31	gold quality
left ovary	UBERON:0002119	58.75	gold quality
ovary	UBERON:0000992	58.42	gold quality
skeletal muscle tissue	UBERON:0001134	57.89	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.82	gold quality
esophagus mucosa	UBERON:0002469	56.62	gold quality
omental fat pad	UBERON:0010414	56.26	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.11	gold quality
urinary bladder	UBERON:0001255	56.06	gold quality
prefrontal cortex	UBERON:0000451	55.73	gold quality
right ovary	UBERON:0002118	55.34	gold quality
lower esophagus mucosa	UBERON:0035834	55.25	gold quality
spleen	UBERON:0002106	54.65	gold quality
liver	UBERON:0002107	54.51	gold quality
tonsil	UBERON:0002372	54.01	gold quality
monocyte	CL:0000576	53.97	silver quality
esophagus	UBERON:0001043	53.01	gold quality
muscle of leg	UBERON:0001383	52.74	gold quality
primary visual cortex	UBERON:0002436	52.02	gold quality
adipose tissue	UBERON:0001013	52.00	gold quality
endometrium	UBERON:0001295	52.00	gold quality
blood	UBERON:0000178	51.61	silver quality
myometrium	UBERON:0001296	50.34	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000106861 (18:55995097 A>C), RS1000201403 (18:56008110 C>A,T), RS1000217016 (18:56014691 C>A,T), RS1000218396 (18:56025349 G>T), RS1000484982 (18:56018742 G>A,T), RS1000495907 (18:56008454 A>G), RS1000666999 (18:56012965 A>G), RS1000827638 (18:56019144 A>G,T), RS1000867721 (18:56025116 T>C), RS1000893451 (18:56020721 T>C), RS1000920837 (18:56014327 T>C,G), RS1001080738 (18:56000906 T>C), RS1001083472 (18:56008369 A>T), RS1001115857 (18:56018852 C>G), RS1001269698 (18:56014667 GT>G)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.