LINC03093

Summary

LINC03093 (long intergenic non-protein coding RNA 3093, HGNC:56723) is a long non-coding RNA gene on chromosome 8p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56723
Approved symbol	LINC03093
Name	long intergenic non-protein coding RNA 3093
Location	8p21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254334
Ensembl biotype	lncRNA
Entrez	101929172
RNAcentral	URS000014FCDD — lncRNA, 1633 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000519996, ENST00000522755, ENST00000660933, ENST00000729281, ENST00000729282

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000519996 — 3 exons

Exon	Start	End
ENSE00002089798	21298161	21298407
ENSE00002123951	21307770	21307893
ENSE00002136498	21308110	21309486

Expression profiles

Bgee: expression breadth broad, 25 present calls, max score 93.94.

Top tissues by expression

169 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.94	gold quality
sperm	CL:0000019	86.73	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	73.83	gold quality
epithelium of nasopharynx	UBERON:0001951	70.39	gold quality
endothelial cell	CL:0000115	67.64	gold quality
subthalamic nucleus	UBERON:0001906	67.01	gold quality
vena cava	UBERON:0004087	66.95	gold quality
superficial temporal artery	UBERON:0001614	66.74	gold quality
vastus lateralis	UBERON:0001379	66.39	gold quality
quadriceps femoris	UBERON:0001377	66.38	gold quality
inferior vagus X ganglion	UBERON:0005363	66.25	gold quality
cardia of stomach	UBERON:0001162	66.08	gold quality
ventral tegmental area	UBERON:0002691	65.84	gold quality
dorsal plus ventral thalamus	UBERON:0001897	65.43	gold quality
nucleus accumbens	UBERON:0001882	65.28	gold quality
corpus callosum	UBERON:0002336	65.10	gold quality
pharyngeal mucosa	UBERON:0000355	65.03	gold quality
saphenous vein	UBERON:0007318	64.99	gold quality
medulla oblongata	UBERON:0001896	64.92	gold quality
putamen	UBERON:0001874	64.85	gold quality
pericardium	UBERON:0002407	64.78	gold quality
cardiac atrium	UBERON:0002081	64.66	gold quality
dorsal root ganglion	UBERON:0000044	64.61	gold quality
adrenal cortex	UBERON:0001235	64.60	gold quality
amygdala	UBERON:0001876	64.51	gold quality
nipple	UBERON:0002030	64.50	gold quality
caecum	UBERON:0001153	64.48	gold quality
superior surface of tongue	UBERON:0007371	64.36	gold quality
substantia nigra pars reticulata	UBERON:0001966	64.35	gold quality
cerebellar hemisphere	UBERON:0002245	64.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.