LINC03094

Summary

LINC03094 (long intergenic non-protein coding RNA 3094, HGNC:56725) is a long non-coding RNA gene on chromosome 9q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56725
Approved symbol	LINC03094
Name	long intergenic non-protein coding RNA 3094
Location	9q31.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	lnc-SMC2-1
Ensembl gene	ENSG00000285483
Ensembl biotype	lncRNA
Entrez	101928523
RNAcentral	URS0000759E86 — lncRNA, 449 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 8 — 8 lncRNA

ENST00000647310, ENST00000773748, ENST00000773749, ENST00000773750, ENST00000773751, ENST00000773752, ENST00000773753, ENST00000773754

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000647310 — 2 exons

Exon	Start	End
ENSE00004139031	103999332	103999826
ENSE00004139036	104000152	104000497

Expression profiles

Bgee: expression breadth broad, 66 present calls, max score 89.78.

Top tissues by expression

66 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	89.78	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	88.96	gold quality
left testis	UBERON:0004533	87.15	gold quality
testis	UBERON:0000473	86.86	gold quality
right testis	UBERON:0004534	86.66	gold quality
hindlimb stylopod muscle	UBERON:0004252	69.05	gold quality
skeletal muscle tissue	UBERON:0001134	64.10	gold quality
multicellular organism	UBERON:0000468	60.82	gold quality
islet of Langerhans	UBERON:0000006	60.16	gold quality
monocyte	CL:0000576	56.76	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.99	gold quality
kidney	UBERON:0002113	55.88	gold quality
muscle of leg	UBERON:0001383	55.13	gold quality
blood	UBERON:0000178	54.84	gold quality
gastrocnemius	UBERON:0001388	53.77	gold quality
prefrontal cortex	UBERON:0000451	53.45	gold quality
adult mammalian kidney	UBERON:0000082	51.43	gold quality
heart left ventricle	UBERON:0002084	50.11	gold quality
heart	UBERON:0000948	49.56	gold quality
right lobe of liver	UBERON:0001114	48.42	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	48.08	gold quality
lower esophagus muscularis layer	UBERON:0035833	47.71	gold quality
lower esophagus	UBERON:0013473	47.66	gold quality
tibial artery	UBERON:0007610	47.56	gold quality
esophagus	UBERON:0001043	47.54	gold quality
putamen	UBERON:0001874	47.01	gold quality
body of pancreas	UBERON:0001150	46.95	gold quality
thoracic aorta	UBERON:0001515	46.92	gold quality
body of stomach	UBERON:0001161	46.85	gold quality
ascending aorta	UBERON:0001496	46.74	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.80

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Genome-wide scan of long noncoding RNA single nucleotide polymorphisms and pancreatic cancer susceptibility. (PMID:33534179)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.