LINC03096

Summary

LINC03096 (long intergenic non-protein coding RNA 3096, HGNC:56743) is a long non-coding RNA gene on chromosome 11p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56743
Approved symbol	LINC03096
Name	long intergenic non-protein coding RNA 3096
Location	11p14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255227
Ensembl biotype	lncRNA
Entrez	128667225
RNAcentral	URS0000212186 — lncRNA, 563 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000527727, ENST00000742975

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000527727 — 6 exons

Exon	Start	End
ENSE00002149605	29457311	29457393
ENSE00002152064	29456037	29456116
ENSE00002169126	29456375	29456471
ENSE00002182415	29456234	29456297
ENSE00002199737	29455701	29455855
ENSE00002200363	29445487	29445570

Expression profiles

Bgee: expression breadth broad, 48 present calls, max score 84.79.

Top tissues by expression

48 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.79	silver quality
endometrium	UBERON:0001295	58.06	silver quality
nucleus accumbens	UBERON:0001882	57.70	gold quality
caudate nucleus	UBERON:0001873	53.77	gold quality
Brodmann (1909) area 9	UBERON:0013540	53.19	gold quality
putamen	UBERON:0001874	52.48	gold quality
blood	UBERON:0000178	49.01	silver quality
monocyte	CL:0000576	47.39	silver quality
lung	UBERON:0002048	46.60	gold quality
right atrium auricular region	UBERON:0006631	46.16	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	45.83	gold quality
body of pancreas	UBERON:0001150	45.23	silver quality
right lobe of thyroid gland	UBERON:0001119	44.98	gold quality
islet of Langerhans	UBERON:0000006	44.91	gold quality
esophagus mucosa	UBERON:0002469	44.05	gold quality
pituitary gland	UBERON:0000007	43.91	gold quality
hypothalamus	UBERON:0001898	43.77	gold quality
thyroid gland	UBERON:0002046	43.75	gold quality
substantia nigra	UBERON:0002038	43.62	gold quality
lower esophagus muscularis layer	UBERON:0035833	43.62	silver quality
left lobe of thyroid gland	UBERON:0001120	43.39	silver quality
muscle layer of sigmoid colon	UBERON:0035805	43.16	gold quality
tibial artery	UBERON:0007610	42.89	silver quality
ascending aorta	UBERON:0001496	42.74	silver quality
gastrocnemius	UBERON:0001388	42.41	silver quality
thoracic aorta	UBERON:0001515	42.36	silver quality
body of stomach	UBERON:0001161	41.26	silver quality
endocervix	UBERON:0000458	41.06	silver quality
subcutaneous adipose tissue	UBERON:0002190	40.36	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	39.96	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.45

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.