LINC03097

Summary

LINC03097 (long intergenic non-protein coding RNA 3097, HGNC:56744) is a long non-coding RNA gene on chromosome 2q33.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56744
Approved symbol	LINC03097
Name	long intergenic non-protein coding RNA 3097
Location	2q33.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000231653
Ensembl biotype	lncRNA
Entrez	128667230
RNAcentral	URS00002D2250 — lncRNA, 566 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000415029

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415029 — 2 exons

Exon	Start	End
ENSE00001648935	206640823	206641282
ENSE00001692478	206640073	206640178

Expression profiles

Bgee: expression breadth broad, 54 present calls, max score 90.53.

Top tissues by expression

54 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.53	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	79.57	silver quality
sural nerve	UBERON:0015488	61.78	gold quality
vermiform appendix	UBERON:0001154	50.38	gold quality
monocyte	CL:0000576	50.19	silver quality
prefrontal cortex	UBERON:0000451	50.01	gold quality
blood	UBERON:0000178	47.11	gold quality
heart left ventricle	UBERON:0002084	46.72	gold quality
gastrocnemius	UBERON:0001388	46.14	silver quality
heart	UBERON:0000948	45.71	gold quality
nucleus accumbens	UBERON:0001882	43.50	silver quality
right atrium auricular region	UBERON:0006631	43.46	silver quality
tibial nerve	UBERON:0001323	43.31	silver quality
skin of leg	UBERON:0001511	43.10	gold quality
transverse colon	UBERON:0001157	43.04	gold quality
left ovary	UBERON:0002119	42.70	silver quality
stomach	UBERON:0000945	42.46	gold quality
tibial artery	UBERON:0007610	42.41	silver quality
lower esophagus muscularis layer	UBERON:0035833	42.30	gold quality
thoracic aorta	UBERON:0001515	41.84	silver quality
substantia nigra	UBERON:0002038	41.56	silver quality
ascending aorta	UBERON:0001496	41.35	silver quality
body of stomach	UBERON:0001161	41.01	gold quality
zone of skin	UBERON:0000014	40.92	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	40.78	silver quality
subcutaneous adipose tissue	UBERON:0002190	40.54	silver quality
body of pancreas	UBERON:0001150	40.27	silver quality
esophagus mucosa	UBERON:0002469	40.25	silver quality
Brodmann (1909) area 9	UBERON:0013540	40.09	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	40.09	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.