LINC03099

Summary

LINC03099 (long intergenic non-protein coding RNA 3099, HGNC:56750) is a long non-coding RNA gene on chromosome Xp11.4.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56750
Approved symbol	LINC03099
Name	long intergenic non-protein coding RNA 3099
Location	Xp11.4
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236393
Ensembl biotype	lncRNA
Entrez	101927476
RNAcentral	URS000075997B — lncRNA, 3001 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000447570, ENST00000452690, ENST00000653973, ENST00000738318, ENST00000738319, ENST00000738320, ENST00000738321, ENST00000738322, ENST00000738323, ENST00000738324

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000447570 — 2 exons

Exon	Start	End
ENSE00004073425	40262966	40263552
ENSE00004073435	40267103	40268474

Expression profiles

Bgee: expression breadth broad, 99 present calls, max score 92.84.

Top tissues by expression

99 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
adrenal tissue	UBERON:0018303	92.84	gold quality
right adrenal gland cortex	UBERON:0035827	84.06	gold quality
adrenal gland	UBERON:0002369	83.96	gold quality
right adrenal gland	UBERON:0001233	83.28	gold quality
left adrenal gland	UBERON:0001234	82.52	gold quality
left adrenal gland cortex	UBERON:0035825	82.01	gold quality
placenta	UBERON:0001987	76.45	gold quality
left ovary	UBERON:0002119	66.37	gold quality
ovary	UBERON:0000992	66.12	gold quality
right ovary	UBERON:0002118	59.58	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	57.51	silver quality
lower esophagus mucosa	UBERON:0035834	57.20	gold quality
right coronary artery	UBERON:0001625	56.48	gold quality
left uterine tube	UBERON:0001303	56.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.89	silver quality
prefrontal cortex	UBERON:0000451	52.31	silver quality
ectocervix	UBERON:0012249	52.06	gold quality
spleen	UBERON:0002106	51.86	gold quality
lymph node	UBERON:0000029	51.37	silver quality
vermiform appendix	UBERON:0001154	50.94	gold quality
blood	UBERON:0000178	50.64	silver quality
thoracic aorta	UBERON:0001515	50.56	gold quality
ascending aorta	UBERON:0001496	50.55	gold quality
lung	UBERON:0002048	50.34	gold quality
multicellular organism	UBERON:0000468	49.69	gold quality
upper lobe of left lung	UBERON:0008952	49.67	gold quality
left coronary artery	UBERON:0001626	49.61	gold quality
urinary bladder	UBERON:0001255	49.40	gold quality
descending thoracic aorta	UBERON:0002345	49.31	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.12	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.