LINC03102

Summary

LINC03102 (long intergenic non-protein coding RNA 3102, HGNC:40277) is a long non-coding RNA gene on chromosome 1p31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40277
Approved symbol	LINC03102
Name	long intergenic non-protein coding RNA 3102
Location	1p31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226088
Ensembl biotype	lncRNA
Entrez	102724548
RNAcentral	URS00026A1BAF — lncRNA, 578 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000413943

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413943 — 2 exons

Exon	Start	End
ENSE00004226450	70360297	70360548
ENSE00004226451	70359556	70359995

Expression profiles

Bgee: expression breadth ubiquitous, 123 present calls, max score 81.85.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0636 / max 14.4081, expressed in 29 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
12809	0.0513	22
12810	0.0122	3

Top tissues by expression

123 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.85	silver quality
left testis	UBERON:0004533	75.53	gold quality
testis	UBERON:0000473	75.18	gold quality
right testis	UBERON:0004534	72.28	gold quality
colonic epithelium	UBERON:0000397	68.31	silver quality
ganglionic eminence	UBERON:0004023	64.54	gold quality
right ovary	UBERON:0002118	61.48	gold quality
lymph node	UBERON:0000029	60.36	gold quality
endometrium	UBERON:0001295	59.88	gold quality
smooth muscle tissue	UBERON:0001135	58.73	gold quality
skeletal muscle tissue	UBERON:0001134	58.72	gold quality
ovary	UBERON:0000992	58.65	gold quality
right lobe of thyroid gland	UBERON:0001119	58.61	gold quality
monocyte	CL:0000576	58.29	gold quality
left ovary	UBERON:0002119	57.99	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.54	gold quality
urinary bladder	UBERON:0001255	57.19	gold quality
prefrontal cortex	UBERON:0000451	57.01	gold quality
thyroid gland	UBERON:0002046	56.77	gold quality
gall bladder	UBERON:0002110	56.54	gold quality
tibial nerve	UBERON:0001323	56.44	gold quality
myometrium	UBERON:0001296	56.37	gold quality
vermiform appendix	UBERON:0001154	56.25	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.24	gold quality
body of uterus	UBERON:0009853	56.17	gold quality
left lobe of thyroid gland	UBERON:0001120	55.94	gold quality
thoracic aorta	UBERON:0001515	55.70	gold quality
ascending aorta	UBERON:0001496	55.51	gold quality
superior frontal gyrus	UBERON:0002661	55.43	gold quality
descending thoracic aorta	UBERON:0002345	55.02	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.