LINC03106

Summary

LINC03106 (long intergenic non-protein coding RNA 3106, HGNC:56836) is a long non-coding RNA gene on chromosome 9p21.2.

Predicted to enable dUTP diphosphatase activity and magnesium ion binding activity. Predicted to be involved in dUMP biosynthetic process and dUTP catabolic process.

Source: NCBI Gene 100506422 — RefSeq curated summary.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56836
Approved symbol	LINC03106
Name	long intergenic non-protein coding RNA 3106
Location	9p21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000276759
Ensembl biotype	lncRNA
Entrez	100506422
RNAcentral	URS00007BBD79 — lncRNA, 2320 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000612217

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000612217 — 7 exons

Exon	Start	End
ENSE00003720428	26114384	26114465
ENSE00003736569	26109953	26110139
ENSE00003740915	26116129	26116246
ENSE00003742160	26116850	26118408
ENSE00003755223	26094493	26094627
ENSE00003757446	26066675	26066826
ENSE00003759490	26092361	26092447

Expression profiles

Bgee: expression breadth broad, 27 present calls, max score 74.58.

Top tissues by expression

27 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.58	gold quality
bone marrow cell	CL:0002092	61.50	silver quality
blood	UBERON:0000178	54.42	silver quality
islet of Langerhans	UBERON:0000006	51.80	gold quality
calcaneal tendon	UBERON:0003701	51.79	silver quality
prefrontal cortex	UBERON:0000451	51.60	silver quality
lymph node	UBERON:0000029	50.94	silver quality
urinary bladder	UBERON:0001255	47.20	silver quality
tonsil	UBERON:0002372	46.86	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	46.76	gold quality
vermiform appendix	UBERON:0001154	46.54	gold quality
cerebral cortex	UBERON:0000956	44.96	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	44.29	gold quality
lower esophagus muscularis layer	UBERON:0035833	42.72	silver quality
colon	UBERON:0001155	42.57	silver quality
saliva-secreting gland	UBERON:0001044	42.55	gold quality
esophagus	UBERON:0001043	42.07	silver quality
body of pancreas	UBERON:0001150	42.05	silver quality
transverse colon	UBERON:0001157	41.98	silver quality
minor salivary gland	UBERON:0001830	41.98	gold quality
pituitary gland	UBERON:0000007	41.00	gold quality
spleen	UBERON:0002106	40.71	silver quality
ascending aorta	UBERON:0001496	40.35	silver quality
body of stomach	UBERON:0001161	39.91	silver quality
left lobe of thyroid gland	UBERON:0001120	37.77	silver quality
right ovary	UBERON:0002118	37.22	silver quality
thoracic mammary gland	UBERON:0005200	36.18	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.