LINC03109

Summary

LINC03109 (long intergenic non-protein coding RNA 3109, HGNC:56845) is a long non-coding RNA gene on chromosome 3q25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56845
Approved symbol	LINC03109
Name	long intergenic non-protein coding RNA 3109
Location	3q25.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC078788.1
Ensembl gene	ENSG00000241220
Ensembl biotype	lncRNA
Entrez	105374166
RNAcentral	URS0002A15B72 — lncRNA, 1261 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000462300, ENST00000498457, ENST00000718349, ENST00000718350, ENST00000718351

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000462300 — 2 exons

Exon	Start	End
ENSE00001893600	153377246	153377562
ENSE00001948898	153376831	153376895

Expression profiles

Bgee: expression breadth ubiquitous, 102 present calls, max score 93.20.

Top tissues by expression

102 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	93.20	gold quality
lymph node	UBERON:0000029	60.66	gold quality
prefrontal cortex	UBERON:0000451	54.67	gold quality
monocyte	CL:0000576	54.40	gold quality
placenta	UBERON:0001987	54.29	gold quality
gall bladder	UBERON:0002110	52.12	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.24	gold quality
apex of heart	UBERON:0002098	50.94	gold quality
corpus callosum	UBERON:0002336	50.75	gold quality
liver	UBERON:0002107	50.69	silver quality
myometrium	UBERON:0001296	50.60	gold quality
granulocyte	CL:0000094	50.48	silver quality
subcutaneous adipose tissue	UBERON:0002190	50.45	gold quality
vermiform appendix	UBERON:0001154	50.24	gold quality
calcaneal tendon	UBERON:0003701	49.86	silver quality
tonsil	UBERON:0002372	49.83	gold quality
blood	UBERON:0000178	49.80	gold quality
spleen	UBERON:0002106	49.60	gold quality
thoracic mammary gland	UBERON:0005200	49.53	gold quality
islet of Langerhans	UBERON:0000006	49.43	gold quality
adipose tissue	UBERON:0001013	48.96	gold quality
right lobe of liver	UBERON:0001114	48.29	silver quality
primary visual cortex	UBERON:0002436	47.00	silver quality
gastrocnemius	UBERON:0001388	46.69	silver quality
omental fat pad	UBERON:0010414	46.48	gold quality
heart left ventricle	UBERON:0002084	46.28	gold quality
amygdala	UBERON:0001876	46.14	gold quality
right lung	UBERON:0002167	46.03	gold quality
ovary	UBERON:0000992	45.60	gold quality
heart	UBERON:0000948	45.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.64

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.