LINC03111

Summary

LINC03111 (long intergenic non-protein coding RNA 3111, HGNC:56850) is a long non-coding RNA gene on chromosome 18q21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56850
Approved symbol	LINC03111
Name	long intergenic non-protein coding RNA 3111
Location	18q21.32
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC090771.2
Ensembl gene	ENSG00000267686
Ensembl biotype	lncRNA
Entrez	130572099
RNAcentral	URS000045E14E — lncRNA, 571 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000588794, ENST00000668793

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000588794 — 3 exons

Exon	Start	End
ENSE00002787939	60129500	60129655
ENSE00002797218	60160971	60161195
ENSE00002847448	60125033	60125222

Expression profiles

Bgee: expression breadth broad, 89 present calls, max score 82.07.

Top tissues by expression

89 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.07	silver quality
ventricular zone	UBERON:0003053	64.49	gold quality
liver	UBERON:0002107	59.63	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	57.21	gold quality
blood	UBERON:0000178	57.20	gold quality
left uterine tube	UBERON:0001303	56.57	gold quality
monocyte	CL:0000576	54.84	gold quality
right lobe of liver	UBERON:0001114	54.74	gold quality
ectocervix	UBERON:0012249	52.15	gold quality
prefrontal cortex	UBERON:0000451	50.87	gold quality
endocervix	UBERON:0000458	50.65	gold quality
descending thoracic aorta	UBERON:0002345	47.79	gold quality
muscle of leg	UBERON:0001383	47.22	gold quality
gastrocnemius	UBERON:0001388	47.01	gold quality
myometrium	UBERON:0001296	46.74	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.32	gold quality
vagina	UBERON:0000996	46.17	gold quality
left ovary	UBERON:0002119	45.83	gold quality
left adrenal gland cortex	UBERON:0035825	45.40	gold quality
multicellular organism	UBERON:0000468	45.27	gold quality
cerebellum	UBERON:0002037	44.84	silver quality
tibial artery	UBERON:0007610	44.71	gold quality
primary visual cortex	UBERON:0002436	44.63	silver quality
cerebellar cortex	UBERON:0002129	44.42	silver quality
esophagus mucosa	UBERON:0002469	44.31	gold quality
adrenal tissue	UBERON:0018303	44.16	silver quality
testis	UBERON:0000473	44.09	gold quality
right testis	UBERON:0004534	44.00	gold quality
cerebellar hemisphere	UBERON:0002245	43.86	silver quality
body of pancreas	UBERON:0001150	43.79	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.75

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.