LINC03116

Summary

LINC03116 (long intergenic non-protein coding RNA 3116, HGNC:56881) is a long non-coding RNA gene on chromosome 2p24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56881
Approved symbol	LINC03116
Name	long intergenic non-protein coding RNA 3116
Location	2p24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234207
Ensembl biotype	lncRNA
Entrez	131855739
RNAcentral	URS0000371FC8 — lncRNA, 569 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000419013

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419013 — 4 exons

Exon	Start	End
ENSE00001620863	22428872	22428966
ENSE00001621898	22377594	22377711
ENSE00001650418	22478397	22478459
ENSE00001703378	22481712	22482004

Expression profiles

Bgee: expression breadth broad, 25 present calls, max score 73.42.

Top tissues by expression

25 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	73.42	gold quality
blood	UBERON:0000178	55.39	gold quality
lung	UBERON:0002048	54.59	gold quality
prefrontal cortex	UBERON:0000451	51.09	gold quality
monocyte	CL:0000576	51.04	silver quality
calcaneal tendon	UBERON:0003701	49.00	silver quality
muscle layer of sigmoid colon	UBERON:0035805	45.58	gold quality
esophagus	UBERON:0001043	43.92	silver quality
heart left ventricle	UBERON:0002084	42.67	silver quality
tibial nerve	UBERON:0001323	42.63	silver quality
Brodmann (1909) area 9	UBERON:0013540	42.46	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	42.08	gold quality
skin of leg	UBERON:0001511	41.32	silver quality
right frontal lobe	UBERON:0002810	41.30	gold quality
thoracic aorta	UBERON:0001515	40.93	silver quality
nucleus accumbens	UBERON:0001882	40.31	silver quality
adenohypophysis	UBERON:0002196	39.19	silver quality
pituitary gland	UBERON:0000007	38.66	gold quality
anterior cingulate cortex	UBERON:0009835	38.63	silver quality
tibial artery	UBERON:0007610	38.31	silver quality
esophagus mucosa	UBERON:0002469	38.14	silver quality
putamen	UBERON:0001874	38.06	silver quality
hypothalamus	UBERON:0001898	37.49	silver quality
right ovary	UBERON:0002118	37.20	silver quality
caudate nucleus	UBERON:0001873	35.41	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.