LINC03117

Summary

LINC03117 (long intergenic non-protein coding RNA 3117, HGNC:56883) is a long non-coding RNA gene on chromosome 14q32.31.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56883
Approved symbol	LINC03117
Name	long intergenic non-protein coding RNA 3117
Location	14q32.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	lincRTL
Entrez	105370672

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000063606 (14:101465327 C>T), RS1000650624 (14:101469866 C>A,T), RS1001235553 (14:101466275 C>T), RS1001266808 (14:101466048 G>A,T), RS1001350922 (14:101475318 G>A), RS1001540342 (14:101467146 C>T), RS1001592833 (14:101466898 A>G,T), RS1001658053 (14:101475054 G>GA), RS1001809828 (14:101471653 C>T), RS1002272622 (14:101467060 C>T), RS1002381713 (14:101470563 C>T), RS1002387884 (14:101476042 G>A), RS1002494608 (14:101471757 C>T), RS1002850660 (14:101476825 T>A,C), RS1003018189 (14:101474602 T>TG)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.