LINC03122

Summary

LINC03122 (long intergenic non-protein coding RNA 3122, HGNC:26744) is a long non-coding RNA gene on chromosome 5q12.1.

Predicted to be located in extracellular region.

Source: NCBI Gene 285668 — RefSeq curated summary.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:26744
Approved symbol	LINC03122
Name	long intergenic non-protein coding RNA 3122
Location	5q12.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ37543
Ensembl gene	ENSG00000178722
Ensembl biotype	lncRNA
Entrez	285668
RNAcentral	URS00009AD4E5 — lncRNA, 2810 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 76 — 75 lncRNA, 1 retained_intron

ENST00000502395, ENST00000505642, ENST00000507461, ENST00000510414, ENST00000511407, ENST00000654772, ENST00000655479, ENST00000656556, ENST00000657803, ENST00000658355, ENST00000658416, ENST00000659260, ENST00000659478, ENST00000663605, ENST00000665180, ENST00000665322, ENST00000666004, ENST00000666506, ENST00000666908, ENST00000667197, ENST00000668061, ENST00000668566, ENST00000668597, ENST00000668865, ENST00000669536, ENST00000671203, ENST00000671321, ENST00000686160, ENST00000688469, ENST00000689803, ENST00000689863, ENST00000690553, ENST00000693412, ENST00000700868, ENST00000701542, ENST00000701581, ENST00000701704, ENST00000701730, ENST00000701735, ENST00000701872, ENST00000701966, ENST00000702088, ENST00000797193, ENST00000797194, ENST00000797195, ENST00000797196, ENST00000797197, ENST00000797198, ENST00000797199, ENST00000797200, ENST00000797201, ENST00000797202, ENST00000797203, ENST00000797204, ENST00000797205, ENST00000797206, ENST00000797207, ENST00000797208, ENST00000797209, ENST00000797210, ENST00000797211, ENST00000797212, ENST00000797213, ENST00000797214, ENST00000797215, ENST00000797216, ENST00000797217, ENST00000797218, ENST00000797219, ENST00000797220, ENST00000797221, ENST00000797222, ENST00000797223, ENST00000797224, ENST00000797225, ENST00000797226

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000502395 — 2 exons

Exon	Start	End
ENSE00002059119	61686872	61687070
ENSE00002067605	61703866	61704183

Expression profiles

Bgee: expression breadth ubiquitous, 156 present calls, max score 86.39.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3914 / max 48.3307, expressed in 75 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
56632	0.3744	73
56633	0.0171	10

Top tissues by expression

237 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
C1 segment of cervical spinal cord	UBERON:0006469	86.39	gold quality
spinal cord	UBERON:0002240	84.04	gold quality
sural nerve	UBERON:0015488	82.20	gold quality
substantia nigra	UBERON:0002038	80.43	gold quality
corpus callosum	UBERON:0002336	79.30	gold quality
medial globus pallidus	UBERON:0002477	78.24	silver quality
amygdala	UBERON:0001876	78.08	gold quality
midbrain	UBERON:0001891	77.98	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.87	gold quality
hypothalamus	UBERON:0001898	77.59	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.23	gold quality
putamen	UBERON:0001874	76.06	gold quality
globus pallidus	UBERON:0001875	74.29	silver quality
anterior cingulate cortex	UBERON:0009835	73.04	gold quality
caudate nucleus	UBERON:0001873	72.72	gold quality
nucleus accumbens	UBERON:0001882	72.50	gold quality
Brodmann (1909) area 9	UBERON:0013540	71.89	gold quality
prefrontal cortex	UBERON:0000451	71.85	gold quality
endothelial cell	CL:0000115	71.13	silver quality
bone marrow cell	CL:0002092	70.75	silver quality
right frontal lobe	UBERON:0002810	70.58	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	68.90	gold quality
Ammon’s horn	UBERON:0001954	68.52	gold quality
neocortex	UBERON:0001950	67.48	gold quality
forebrain	UBERON:0001890	66.88	gold quality
brain	UBERON:0000955	66.74	gold quality
frontal cortex	UBERON:0001870	66.74	gold quality
cerebral cortex	UBERON:0000956	65.98	gold quality
cortical plate	UBERON:0005343	64.31	gold quality
temporal lobe	UBERON:0001871	63.82	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.38

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.