LINC03124

Summary

LINC03124 (long intergenic non-protein coding RNA 3124, HGNC:25077) is a long non-coding RNA gene on chromosome 2q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:25077
Approved symbol	LINC03124
Name	long intergenic non-protein coding RNA 3124
Location	2q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000287151
Ensembl biotype	lncRNA
Entrez	29798
RNAcentral	URS0001BBE460 — lncRNA, 2308 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 155 — 155 lncRNA

ENST00000463645, ENST00000466372, ENST00000481510, ENST00000624391, ENST00000652878, ENST00000653458, ENST00000655714, ENST00000657415, ENST00000666411, ENST00000779756, ENST00000779757, ENST00000779758, ENST00000779759, ENST00000779760, ENST00000779761, ENST00000779762, ENST00000779763, ENST00000779764, ENST00000779765, ENST00000779766, ENST00000779767, ENST00000779768, ENST00000779769, ENST00000779770, ENST00000779771, ENST00000779772, ENST00000779773, ENST00000779774, ENST00000779775, ENST00000779776, ENST00000779777, ENST00000779778, ENST00000779779, ENST00000779780, ENST00000779781, ENST00000779782, ENST00000779784, ENST00000779785, ENST00000779786, ENST00000779788, ENST00000779790, ENST00000779791, ENST00000779792, ENST00000779793, ENST00000779794, ENST00000779795, ENST00000779796, ENST00000779797, ENST00000779798, ENST00000779799, ENST00000779800, ENST00000779801, ENST00000779802, ENST00000779803, ENST00000779804, ENST00000779805, ENST00000779806, ENST00000779807, ENST00000779808, ENST00000779809, ENST00000779810, ENST00000779811, ENST00000779812, ENST00000779813, ENST00000779814, ENST00000779815, ENST00000779816, ENST00000779817, ENST00000779818, ENST00000779819, ENST00000779820, ENST00000779821, ENST00000779822, ENST00000779823, ENST00000779824, ENST00000779825, ENST00000779826, ENST00000779827, ENST00000779828, ENST00000779829, ENST00000779830, ENST00000779831, ENST00000779832, ENST00000779833, ENST00000779834, ENST00000779835, ENST00000779836, ENST00000779837, ENST00000779838, ENST00000779839, ENST00000779840, ENST00000779841, ENST00000779842, ENST00000779843, ENST00000779844, ENST00000779845, ENST00000779846, ENST00000779847, ENST00000779848, ENST00000779849, ENST00000779850, ENST00000779851, ENST00000779852, ENST00000779853, ENST00000779854, ENST00000779855, ENST00000779856, ENST00000779857, ENST00000779858, ENST00000779859, ENST00000779860, ENST00000779861, ENST00000779862, ENST00000779863, ENST00000779864, ENST00000779865, ENST00000779866, ENST00000779867, ENST00000779868, ENST00000779869, ENST00000779870, ENST00000779871, ENST00000779872, ENST00000779873, ENST00000779874, ENST00000779875, ENST00000779876, ENST00000779877, ENST00000779878, ENST00000779879, ENST00000779880, ENST00000779881, ENST00000779882, ENST00000779883, ENST00000779884, ENST00000779885, ENST00000779886, ENST00000779887, ENST00000779888, ENST00000779889, ENST00000779890, ENST00000779891, ENST00000779892, ENST00000779893, ENST00000779894, ENST00000779895, ENST00000779896, ENST00000779897, ENST00000779898, ENST00000779899, ENST00000779900, ENST00000779901, ENST00000779902, ENST00000779903, ENST00000779904

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000463645 — 3 exons

Exon	Start	End
ENSE00001839963	131751509	131751669
ENSE00001878682	131733656	131733952
ENSE00003873780	131750633	131750830

Expression profiles

Bgee: expression breadth ubiquitous, 132 present calls, max score 84.95.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.4027 / max 685.6169, expressed in 1688 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
22558	12.4027	1688

Top tissues by expression

132 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.95	gold quality
stromal cell of endometrium	CL:0002255	82.34	gold quality
adrenal tissue	UBERON:0018303	80.62	gold quality
islet of Langerhans	UBERON:0000006	79.13	gold quality
calcaneal tendon	UBERON:0003701	78.77	gold quality
cortical plate	UBERON:0005343	77.86	gold quality
endometrium	UBERON:0001295	77.41	gold quality
pancreas	UBERON:0001264	77.38	gold quality
ventricular zone	UBERON:0003053	77.27	gold quality
superior frontal gyrus	UBERON:0002661	76.94	gold quality
gall bladder	UBERON:0002110	76.71	gold quality
hypothalamus	UBERON:0001898	76.66	gold quality
body of pancreas	UBERON:0001150	76.51	gold quality
primary visual cortex	UBERON:0002436	76.50	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	75.86	gold quality
amygdala	UBERON:0001876	75.50	gold quality
temporal lobe	UBERON:0001871	75.39	gold quality
Ammon’s horn	UBERON:0001954	75.27	gold quality
nucleus accumbens	UBERON:0001882	75.10	gold quality
corpus callosum	UBERON:0002336	75.08	gold quality
duodenum	UBERON:0002114	74.94	gold quality
anterior cingulate cortex	UBERON:0009835	74.61	gold quality
ganglionic eminence	UBERON:0004023	74.58	gold quality
substantia nigra	UBERON:0002038	74.27	gold quality
ascending aorta	UBERON:0001496	74.16	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	74.14	gold quality
thoracic aorta	UBERON:0001515	73.99	gold quality
testis	UBERON:0000473	73.93	gold quality
cerebral cortex	UBERON:0000956	73.68	gold quality
left testis	UBERON:0004533	73.42	gold quality

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.