LINC03125

Summary

LINC03125 (long intergenic non-protein coding RNA 3125, HGNC:57012) is a long non-coding RNA gene on chromosome 20p11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:57012
Approved symbol	LINC03125
Name	long intergenic non-protein coding RNA 3125
Location	20p11.21
Locus type	RNA, long non-coding
Status	Approved
Aliases	InSETG-4
Ensembl gene	ENSG00000230387
Ensembl biotype	lncRNA
Entrez	100505664
RNAcentral	URS000076334D — lncRNA, 2345 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 75 — 75 lncRNA

ENST00000411595, ENST00000613502, ENST00000622708, ENST00000651897, ENST00000652960, ENST00000653250, ENST00000653675, ENST00000653694, ENST00000654323, ENST00000655027, ENST00000656146, ENST00000656333, ENST00000656699, ENST00000657770, ENST00000658111, ENST00000658127, ENST00000658507, ENST00000659149, ENST00000659548, ENST00000659901, ENST00000660151, ENST00000660372, ENST00000660732, ENST00000660909, ENST00000661171, ENST00000661460, ENST00000661992, ENST00000662891, ENST00000662902, ENST00000663750, ENST00000665327, ENST00000665491, ENST00000666551, ENST00000666879, ENST00000666940, ENST00000667058, ENST00000667753, ENST00000667919, ENST00000668592, ENST00000668880, ENST00000669811, ENST00000669864, ENST00000670224, ENST00000670747, ENST00000670920, ENST00000671163, ENST00000671352, ENST00000671511, ENST00000671541, ENST00000671613, ENST00000671677, ENST00000687884, ENST00000688260, ENST00000720384, ENST00000720385, ENST00000720386, ENST00000720387, ENST00000720388, ENST00000720389, ENST00000720390, ENST00000720391, ENST00000720392, ENST00000720393, ENST00000720394, ENST00000720395, ENST00000720396, ENST00000720397, ENST00000720398, ENST00000720399, ENST00000720400, ENST00000720401, ENST00000720402, ENST00000720403, ENST00000720404, ENST00000720405

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000411595 — 2 exons

Exon	Start	End
ENSE00001673689	23187975	23188158
ENSE00001684449	23189783	23190307

Expression profiles

Bgee: expression breadth ubiquitous, 153 present calls, max score 91.02.

Top tissues by expression

245 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
skin of abdomen	UBERON:0001416	91.02	gold quality
skin of leg	UBERON:0001511	90.98	gold quality
zone of skin	UBERON:0000014	88.42	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.77	gold quality
upper arm skin	UBERON:0004263	84.85	gold quality
islet of Langerhans	UBERON:0000006	80.07	gold quality
sperm	CL:0000019	78.25	gold quality
left testis	UBERON:0004533	78.17	gold quality
right testis	UBERON:0004534	76.93	gold quality
testis	UBERON:0000473	75.05	gold quality
lower esophagus mucosa	UBERON:0035834	73.33	gold quality
upper leg skin	UBERON:0004262	72.75	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.07	gold quality
esophagus mucosa	UBERON:0002469	68.92	gold quality
right hemisphere of cerebellum	UBERON:0014890	67.75	gold quality
adenohypophysis	UBERON:0002196	67.50	gold quality
right lung	UBERON:0002167	67.46	gold quality
vagina	UBERON:0000996	67.32	gold quality
skin of hip	UBERON:0001554	66.44	gold quality
pancreas	UBERON:0001264	66.20	gold quality
pituitary gland	UBERON:0000007	66.14	gold quality
adult mammalian kidney	UBERON:0000082	64.95	gold quality
colonic epithelium	UBERON:0000397	64.64	silver quality
right frontal lobe	UBERON:0002810	64.26	gold quality
ventricular zone	UBERON:0003053	64.18	gold quality
esophagus squamous epithelium	UBERON:0006920	63.87	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	62.80	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.66	gold quality
myocardium	UBERON:0002349	62.42	gold quality
gingival epithelium	UBERON:0001949	62.40	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.19

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.