LINC03126

Summary

LINC03126 (long intergenic non-protein coding RNA 3126, HGNC:57013) is a long non-coding RNA gene on chromosome 1p36.13.

Predicted to enable pre-mRNA 5’-splice site binding activity and triplet codon-amino acid adaptor activity. Predicted to be involved in mRNA 5’-splice site recognition and translation. Predicted to be part of U1 snRNP.

Source: NCBI Gene 112267871 — RefSeq curated summary.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:57013
Approved symbol	LINC03126
Name	long intergenic non-protein coding RNA 3126
Location	1p36.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228549
Ensembl biotype	lncRNA
Entrez	112267871
RNAcentral	URS0000E60AA8 — tRNA, 1231 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000438002, ENST00000451828, ENST00000453554, ENST00000457856, ENST00000658705, ENST00000660907, ENST00000662795, ENST00000666785, ENST00000668460

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000438002 — 2 exons

Exon	Start	End
ENSE00001635018	16873723	16874079
ENSE00001698707	16870945	16873107

Expression profiles

Bgee: expression breadth ubiquitous, 131 present calls, max score 84.76.

Top tissues by expression

131 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	84.76	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.84	gold quality
left testis	UBERON:0004533	80.74	gold quality
right testis	UBERON:0004534	80.71	gold quality
testis	UBERON:0000473	80.24	gold quality
cortical plate	UBERON:0005343	77.31	gold quality
bone marrow cell	CL:0002092	76.14	gold quality
ganglionic eminence	UBERON:0004023	73.84	gold quality
granulocyte	CL:0000094	73.72	gold quality
mucosa of stomach	UBERON:0001199	71.56	gold quality
fundus of stomach	UBERON:0001160	70.57	gold quality
blood	UBERON:0000178	69.56	gold quality
muscle layer of sigmoid colon	UBERON:0035805	69.28	gold quality
body of pancreas	UBERON:0001150	68.96	gold quality
body of stomach	UBERON:0001161	68.15	gold quality
cerebellum	UBERON:0002037	67.97	gold quality
cerebellar cortex	UBERON:0002129	67.91	gold quality
stomach	UBERON:0000945	67.88	gold quality
cerebellar hemisphere	UBERON:0002245	67.81	gold quality
right adrenal gland	UBERON:0001233	67.79	gold quality
right uterine tube	UBERON:0001302	67.64	gold quality
right lobe of thyroid gland	UBERON:0001119	67.53	gold quality
endometrium	UBERON:0001295	67.39	gold quality
calcaneal tendon	UBERON:0003701	67.16	gold quality
left adrenal gland	UBERON:0001234	67.06	gold quality
pancreas	UBERON:0001264	66.94	gold quality
right hemisphere of cerebellum	UBERON:0014890	66.94	gold quality
left adrenal gland cortex	UBERON:0035825	66.82	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	66.81	gold quality
ventricular zone	UBERON:0003053	66.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.