LINC03130

Summary

LINC03130 (long intergenic non-protein coding RNA 3130, HGNC:58087) is a long non-coding RNA gene on chromosome 12q21.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58087
Approved symbol	LINC03130
Name	long intergenic non-protein coding RNA 3130
Location	12q21.33
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC025254.1
Ensembl gene	ENSG00000258125
Ensembl biotype	lncRNA
Entrez	137805482
RNAcentral	URS00004F94F8 — lncRNA, 247 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000550035

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000550035 — 2 exons

Exon	Start	End
ENSE00002357774	91680131	91680293
ENSE00002368958	91680790	91680873

Expression profiles

Bgee: expression breadth broad, 63 present calls, max score 87.37.

Top tissues by expression

63 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.37	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.22	gold quality
prefrontal cortex	UBERON:0000451	68.65	gold quality
adult mammalian kidney	UBERON:0000082	67.55	gold quality
lymph node	UBERON:0000029	67.15	gold quality
islet of Langerhans	UBERON:0000006	64.92	gold quality
blood	UBERON:0000178	61.46	gold quality
right lobe of liver	UBERON:0001114	61.34	gold quality
right adrenal gland	UBERON:0001233	58.46	gold quality
Ammon’s horn	UBERON:0001954	57.75	gold quality
body of pancreas	UBERON:0001150	57.32	gold quality
tibial artery	UBERON:0007610	56.52	gold quality
gastrocnemius	UBERON:0001388	55.27	gold quality
left coronary artery	UBERON:0001626	55.26	gold quality
corpus callosum	UBERON:0002336	54.74	gold quality
heart left ventricle	UBERON:0002084	54.34	gold quality
Brodmann (1909) area 9	UBERON:0013540	54.34	gold quality
lower esophagus muscularis layer	UBERON:0035833	53.88	gold quality
esophagus mucosa	UBERON:0002469	53.76	gold quality
left adrenal gland cortex	UBERON:0035825	53.44	gold quality
frontal cortex	UBERON:0001870	53.00	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	52.96	gold quality
thoracic aorta	UBERON:0001515	52.61	gold quality
ascending aorta	UBERON:0001496	52.46	gold quality
hypothalamus	UBERON:0001898	52.28	gold quality
right atrium auricular region	UBERON:0006631	52.00	gold quality
left adrenal gland	UBERON:0001234	51.93	gold quality
muscle layer of sigmoid colon	UBERON:0035805	51.66	gold quality
colon	UBERON:0001155	51.65	gold quality
subcutaneous adipose tissue	UBERON:0002190	51.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.