LINC03131

Summary

LINC03131 (long intergenic non-protein coding RNA 3131, HGNC:58088) is a long non-coding RNA gene on chromosome 9p23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58088
Approved symbol	LINC03131
Name	long intergenic non-protein coding RNA 3131
Location	9p23
Locus type	RNA, long non-coding
Status	Approved
Aliases	AL162413.1
Ensembl gene	ENSG00000270372
Ensembl biotype	lncRNA
Entrez	124902119
RNAcentral	URS0002A18F93 — lncRNA, 1000 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 26 lncRNA

ENST00000603198, ENST00000827113, ENST00000827114, ENST00000827115, ENST00000827116, ENST00000827117, ENST00000827118, ENST00000827119, ENST00000827120, ENST00000827121, ENST00000827122, ENST00000827123, ENST00000827124, ENST00000827125, ENST00000827126, ENST00000827127, ENST00000827128, ENST00000827129, ENST00000827130, ENST00000827131, ENST00000827132, ENST00000827133, ENST00000827134, ENST00000827135, ENST00000827136, ENST00000827137

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000603198 — 3 exons

Exon	Start	End
ENSE00004238670	11046535	11046656
ENSE00004238677	11064969	11065127
ENSE00004238682	10948281	10948481

Expression profiles

Bgee: expression breadth broad, 33 present calls, max score 93.07.

Top tissues by expression

33 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	93.07	gold quality
blood	UBERON:0000178	90.72	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	82.48	gold quality
calcaneal tendon	UBERON:0003701	79.98	gold quality
monocyte	CL:0000576	75.66	gold quality
body of pancreas	UBERON:0001150	75.03	gold quality
esophagus mucosa	UBERON:0002469	72.78	gold quality
body of stomach	UBERON:0001161	71.72	gold quality
stomach	UBERON:0000945	70.84	gold quality
upper lobe of left lung	UBERON:0008952	70.18	gold quality
lung	UBERON:0002048	70.08	gold quality
hypothalamus	UBERON:0001898	68.93	gold quality
skin of abdomen	UBERON:0001416	68.65	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	67.95	gold quality
right hemisphere of cerebellum	UBERON:0014890	67.93	gold quality
Ammon’s horn	UBERON:0001954	67.55	gold quality
cerebellar hemisphere	UBERON:0002245	67.00	gold quality
minor salivary gland	UBERON:0001830	66.62	gold quality
fallopian tube	UBERON:0003889	66.06	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	65.73	gold quality
skin of leg	UBERON:0001511	65.14	gold quality
caudate nucleus	UBERON:0001873	63.97	gold quality
left adrenal gland	UBERON:0001234	63.45	gold quality
amygdala	UBERON:0001876	62.15	gold quality
pituitary gland	UBERON:0000007	61.73	gold quality
anterior cingulate cortex	UBERON:0009835	61.00	gold quality
left lobe of thyroid gland	UBERON:0001120	59.31	gold quality
nucleus accumbens	UBERON:0001882	58.74	gold quality
right frontal lobe	UBERON:0002810	58.71	gold quality
adenohypophysis	UBERON:0002196	57.19	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.87

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.