LINC03133

Summary

LINC03133 (long intergenic non-protein coding RNA 3133, HGNC:58095) is a long non-coding RNA gene on chromosome 8q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58095
Approved symbol	LINC03133
Name	long intergenic non-protein coding RNA 3133
Location	8q12.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	Lnc-CYP7A1-1
Ensembl gene	ENSG00000253281
Ensembl biotype	lncRNA
Entrez	101929528
RNAcentral	URS000075AD85 — lncRNA, 1705 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 21 — 20 lncRNA, 1 retained_intron

ENST00000518779, ENST00000519981, ENST00000522744, ENST00000523886, ENST00000656665, ENST00000658857, ENST00000659840, ENST00000660882, ENST00000661901, ENST00000663338, ENST00000663859, ENST00000665297, ENST00000666783, ENST00000669557, ENST00000670856, ENST00000739952, ENST00000739953, ENST00000739954, ENST00000739955, ENST00000739956, ENST00000739957

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000518779 — 3 exons

Exon	Start	End
ENSE00002127432	58272004	58272042
ENSE00002129150	58259858	58260024
ENSE00003376380	58259738	58259841

Expression profiles

Bgee: expression breadth broad, 48 present calls, max score 94.78.

Top tissues by expression

169 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.78	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.81	gold quality
right testis	UBERON:0004534	64.85	gold quality
left testis	UBERON:0004533	63.52	gold quality
testis	UBERON:0000473	61.68	gold quality
anterior cingulate cortex	UBERON:0009835	57.29	gold quality
islet of Langerhans	UBERON:0000006	54.54	gold quality
monocyte	CL:0000576	53.19	silver quality
tibial artery	UBERON:0007610	53.05	gold quality
body of stomach	UBERON:0001161	50.01	gold quality
lower lobe of lung	UBERON:0008949	49.53	silver quality
left adrenal gland cortex	UBERON:0035825	49.43	silver quality
esophagogastric junction muscularis propria	UBERON:0035841	49.35	gold quality
ectocervix	UBERON:0012249	48.94	gold quality
Brodmann (1909) area 9	UBERON:0013540	48.59	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	47.75	gold quality
lower esophagus muscularis layer	UBERON:0035833	47.26	gold quality
right lobe of liver	UBERON:0001114	46.83	silver quality
gastrocnemius	UBERON:0001388	46.35	gold quality
body of pancreas	UBERON:0001150	45.74	silver quality
right atrium auricular region	UBERON:0006631	45.39	gold quality
spleen	UBERON:0002106	44.35	silver quality
muscle layer of sigmoid colon	UBERON:0035805	44.31	gold quality
aorta	UBERON:0000947	44.29	gold quality
thoracic aorta	UBERON:0001515	44.24	gold quality
skin of abdomen	UBERON:0001416	44.00	silver quality
ascending aorta	UBERON:0001496	43.81	silver quality
esophagus mucosa	UBERON:0002469	43.60	silver quality
anatomical system	UBERON:0000467	43.41	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.