LINC03135

Summary

LINC03135 (long intergenic non-protein coding RNA 3135, HGNC:58100) is a long non-coding RNA gene on chromosome 6p21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58100
Approved symbol	LINC03135
Name	long intergenic non-protein coding RNA 3135
Location	6p21.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	AL033519.3, RP3-340B19.3
Ensembl gene	ENSG00000228559
Ensembl biotype	lncRNA
Entrez	101929309
RNAcentral	URS00026A2856 — lncRNA, 638 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000450618, ENST00000658088, ENST00000664260, ENST00000722031, ENST00000722032, ENST00000722033, ENST00000722034, ENST00000722035, ENST00000722036, ENST00000722037, ENST00000722038, ENST00000722039, ENST00000722040

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000450618 — 3 exons

Exon	Start	End
ENSE00001699321	35544868	35544933
ENSE00001751495	35545215	35545669
ENSE00001762624	35544632	35544705

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 78.84.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of thyroid gland	UBERON:0001119	78.84	gold quality
thyroid gland	UBERON:0002046	77.93	gold quality
left lobe of thyroid gland	UBERON:0001120	77.67	gold quality
right lung	UBERON:0002167	65.67	gold quality
minor salivary gland	UBERON:0001830	64.49	gold quality
saliva-secreting gland	UBERON:0001044	63.72	gold quality
upper lobe of left lung	UBERON:0008952	63.71	gold quality
lung	UBERON:0002048	61.81	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.62	gold quality
cortical plate	UBERON:0005343	61.19	silver quality
skeletal muscle tissue	UBERON:0001134	58.92	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	57.59	gold quality
urinary bladder	UBERON:0001255	57.16	gold quality
lymph node	UBERON:0000029	56.81	gold quality
small intestine	UBERON:0002108	56.64	gold quality
small intestine Peyer’s patch	UBERON:0003454	56.64	gold quality
ganglionic eminence	UBERON:0004023	56.29	silver quality
kidney	UBERON:0002113	55.32	gold quality
lower esophagus muscularis layer	UBERON:0035833	55.13	gold quality
lower esophagus	UBERON:0013473	55.07	gold quality
blood	UBERON:0000178	54.58	gold quality
skin of leg	UBERON:0001511	54.22	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	54.11	silver quality
muscle of leg	UBERON:0001383	54.11	gold quality
gastrocnemius	UBERON:0001388	53.98	gold quality
esophagus	UBERON:0001043	53.04	gold quality
multicellular organism	UBERON:0000468	52.95	gold quality
stomach	UBERON:0000945	52.74	gold quality
body of stomach	UBERON:0001161	52.72	gold quality
zone of skin	UBERON:0000014	52.46	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.42

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.