LINC03138

Summary

LINC03138 (long intergenic non-protein coding RNA 3138, HGNC:58104) is a long non-coding RNA gene on chromosome 21q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58104
Approved symbol	LINC03138
Name	long intergenic non-protein coding RNA 3138
Location	21q21.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	AF131217.1
Ensembl gene	ENSG00000232855
Ensembl biotype	lncRNA
Entrez	137805490
RNAcentral	URS0000787615 — lncRNA, 6103 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 43 — 43 lncRNA

ENST00000430247, ENST00000433310, ENST00000452028, ENST00000654020, ENST00000657148, ENST00000659279, ENST00000824757, ENST00000824758, ENST00000824759, ENST00000824760, ENST00000824761, ENST00000824762, ENST00000824763, ENST00000824764, ENST00000824765, ENST00000824766, ENST00000824767, ENST00000824768, ENST00000824769, ENST00000824770, ENST00000824771, ENST00000824772, ENST00000824773, ENST00000824774, ENST00000824775, ENST00000824776, ENST00000824777, ENST00000824778, ENST00000824779, ENST00000824780, ENST00000824781, ENST00000824782, ENST00000824783, ENST00000824784, ENST00000824785, ENST00000824786, ENST00000824787, ENST00000824788, ENST00000824789, ENST00000824790, ENST00000824791, ENST00000824792, ENST00000824793

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000430247 — 5 exons

Exon	Start	End
ENSE00001674510	28577275	28577380
ENSE00001711357	28446290	28446472
ENSE00001739657	28482957	28483069
ENSE00001748114	28444549	28444809
ENSE00001757273	28626585	28626604

Expression profiles

Bgee: expression breadth ubiquitous, 130 present calls, max score 81.92.

Top tissues by expression

130 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.92	gold quality
stromal cell of endometrium	CL:0002255	81.76	gold quality
urinary bladder	UBERON:0001255	81.71	gold quality
lower esophagus muscularis layer	UBERON:0035833	79.47	gold quality
lower esophagus	UBERON:0013473	79.44	gold quality
prostate gland	UBERON:0002367	76.50	gold quality
corpus callosum	UBERON:0002336	75.38	gold quality
placenta	UBERON:0001987	74.77	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	74.54	gold quality
mucosa of stomach	UBERON:0001199	73.11	gold quality
bone marrow cell	CL:0002092	70.64	gold quality
esophagus	UBERON:0001043	69.71	gold quality
ectocervix	UBERON:0012249	68.26	gold quality
vagina	UBERON:0000996	67.83	gold quality
sural nerve	UBERON:0015488	67.79	gold quality
skeletal muscle tissue	UBERON:0001134	67.25	gold quality
fundus of stomach	UBERON:0001160	67.14	gold quality
colonic epithelium	UBERON:0000397	66.95	silver quality
right lung	UBERON:0002167	66.58	gold quality
calcaneal tendon	UBERON:0003701	66.01	gold quality
subcutaneous adipose tissue	UBERON:0002190	65.78	gold quality
thoracic aorta	UBERON:0001515	64.85	gold quality
uterine cervix	UBERON:0000002	64.83	gold quality
granulocyte	CL:0000094	64.79	gold quality
ascending aorta	UBERON:0001496	64.74	gold quality
popliteal artery	UBERON:0002250	64.15	gold quality
tibial artery	UBERON:0007610	64.09	gold quality
tibial nerve	UBERON:0001323	64.04	gold quality
apex of heart	UBERON:0002098	64.00	gold quality
muscle layer of sigmoid colon	UBERON:0035805	63.67	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.74

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.