LINC03139

Summary

LINC03139 (long intergenic non-protein coding RNA 3139, HGNC:58111) is a long non-coding RNA gene on chromosome 10q22.1.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58111
Approved symbol	LINC03139
Name	long intergenic non-protein coding RNA 3139
Location	10q22.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-472G21.2
Entrez	124902447

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1001423244 (10:71876231 G>A,C), RS1001786763 (10:71877394 C>T), RS1001860141 (10:71877138 T>A), RS1003387534 (10:71878522 G>A), RS1004344025 (10:71877629 G>C), RS1004488776 (10:71877916 G>T), RS1004840719 (10:71876480 G>A,C), RS1005089728 (10:71878894 G>A), RS1005484753 (10:71876882 G>A,T), RS1005883518 (10:71876949 G>A), RS1007234573 (10:71877868 T>C), RS1008242903 (10:71879112 C>T), RS1008296756 (10:71878811 C>T), RS1008943071 (10:71879374 A>G), RS1009097954 (10:71878049 A>C)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.