LINC03142

Summary

LINC03142 (long intergenic non-protein coding RNA 3142, HGNC:58153) is a long non-coding RNA gene on chromosome 9p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58153
Approved symbol	LINC03142
Name	long intergenic non-protein coding RNA 3142
Location	9p21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000284418
Ensembl biotype	lncRNA
Entrez	139198559
RNAcentral	URS0002A5CFD3 — lncRNA, 1939 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000640003, ENST00000664493, ENST00000701720, ENST00000764217, ENST00000764218, ENST00000764219, ENST00000764220, ENST00000764221, ENST00000764222, ENST00000764223, ENST00000764224, ENST00000764225, ENST00000764226, ENST00000764227, ENST00000764228, ENST00000764229, ENST00000764230, ENST00000764231, ENST00000764232, ENST00000764233, ENST00000764234, ENST00000764235

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000640003 — 10 exons

Exon	Start	End
ENSE00003801540	22703516	22703741
ENSE00003802543	22741378	22741520
ENSE00003802861	22765162	22765276
ENSE00003803487	22752754	22752816
ENSE00003803529	23006080	23006197
ENSE00003805010	22822018	22822085
ENSE00003808285	22874198	22874319
ENSE00003809769	22748228	22748308
ENSE00003810040	23264227	23264337
ENSE00003811180	23438562	23438700

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 77.45.

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.45	gold quality
muscle tissue	UBERON:0002385	75.94	gold quality
liver	UBERON:0002107	71.01	gold quality
cortical plate	UBERON:0005343	68.53	gold quality
right lobe of liver	UBERON:0001114	66.76	gold quality
colonic epithelium	UBERON:0000397	66.63	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	59.52	silver quality
hindlimb stylopod muscle	UBERON:0004252	57.40	silver quality
ganglionic eminence	UBERON:0004023	54.88	silver quality
prefrontal cortex	UBERON:0000451	52.55	gold quality
kidney	UBERON:0002113	52.51	gold quality
adult mammalian kidney	UBERON:0000082	52.50	gold quality
cortex of kidney	UBERON:0001225	51.05	gold quality
subcutaneous adipose tissue	UBERON:0002190	50.97	gold quality
thoracic mammary gland	UBERON:0005200	49.55	gold quality
adipose tissue	UBERON:0001013	49.40	gold quality
gall bladder	UBERON:0002110	49.01	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	48.73	gold quality
duodenum	UBERON:0002114	48.64	silver quality
monocyte	CL:0000576	48.30	silver quality
blood	UBERON:0000178	48.04	silver quality
muscle of leg	UBERON:0001383	47.16	silver quality
islet of Langerhans	UBERON:0000006	46.68	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.64	silver quality
right adrenal gland	UBERON:0001233	46.52	gold quality
gastrocnemius	UBERON:0001388	46.14	silver quality
adrenal tissue	UBERON:0018303	46.10	silver quality
pancreas	UBERON:0001264	45.90	gold quality
urinary bladder	UBERON:0001255	45.82	gold quality
superior frontal gyrus	UBERON:0002661	45.71	silver quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	60.16
E-ANND-3	yes	3.09

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.