LINC03143

Summary

LINC03143 (long intergenic non-protein coding RNA 3143, HGNC:58162) is a long non-coding RNA gene on chromosome 3p21.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58162
Approved symbol	LINC03143
Name	long intergenic non-protein coding RNA 3143
Location	3p21.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	U73166
Ensembl gene	ENSG00000230454
Ensembl biotype	lncRNA
Entrez	139198561
RNAcentral	URS0000481E19 — lncRNA, 2625 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000426302, ENST00000439898, ENST00000453717, ENST00000830091

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426302 — 2 exons

Exon	Start	End
ENSE00001606122	50261233	50261316
ENSE00001747954	50262967	50263312

Expression profiles

Bgee: expression breadth ubiquitous, 200 present calls, max score 93.93.

Top tissues by expression

235 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	93.93	gold quality
sperm	CL:0000019	88.03	gold quality
left testis	UBERON:0004533	82.79	gold quality
right testis	UBERON:0004534	82.36	gold quality
testis	UBERON:0000473	80.19	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.12	gold quality
sural nerve	UBERON:0015488	74.57	gold quality
myocardium	UBERON:0002349	73.87	gold quality
cerebellar vermis	UBERON:0004720	73.14	silver quality
lower lobe of lung	UBERON:0008949	72.29	silver quality
layer of synovial tissue	UBERON:0007616	72.09	gold quality
nipple	UBERON:0002030	71.57	silver quality
stromal cell of endometrium	CL:0002255	71.20	gold quality
bone marrow cell	CL:0002092	71.16	silver quality
cortical plate	UBERON:0005343	70.88	gold quality
right lobe of thyroid gland	UBERON:0001119	70.84	gold quality
left lobe of thyroid gland	UBERON:0001120	70.82	gold quality
medial globus pallidus	UBERON:0002477	70.62	silver quality
renal medulla	UBERON:0000362	70.61	silver quality
globus pallidus	UBERON:0001875	70.54	silver quality
thyroid gland	UBERON:0002046	70.38	gold quality
tendon of biceps brachii	UBERON:0008188	70.31	gold quality
thymus	UBERON:0002370	70.27	silver quality
pylorus	UBERON:0001166	70.16	silver quality
trabecular bone tissue	UBERON:0002483	69.99	silver quality
synovial joint	UBERON:0002217	69.95	gold quality
ganglionic eminence	UBERON:0004023	69.89	gold quality
cardia of stomach	UBERON:0001162	69.81	silver quality
seminal vesicle	UBERON:0000998	69.68	gold quality
trachea	UBERON:0003126	69.37	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.