LINC03146

Summary

LINC03146 (long intergenic non-protein coding RNA 3146, HGNC:58312) is a long non-coding RNA gene on chromosome 17q11.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58312
Approved symbol	LINC03146
Name	long intergenic non-protein coding RNA 3146
Location	17q11.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000266313
Ensembl biotype	lncRNA
Entrez	124903957
RNAcentral	URS0002A239B9 — lncRNA, 1693 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000581118, ENST00000656365, ENST00000666005, ENST00000728513, ENST00000728514, ENST00000728515, ENST00000728516, ENST00000728517, ENST00000728518, ENST00000728519, ENST00000728520, ENST00000728521, ENST00000728522, ENST00000728523, ENST00000728524, ENST00000728525, ENST00000728526, ENST00000728527, ENST00000728528, ENST00000728529, ENST00000728530, ENST00000728531, ENST00000728532, ENST00000728533, ENST00000728534, ENST00000728535, ENST00000728536

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000581118 — 3 exons

Exon	Start	End
ENSE00002701224	27333256	27333427
ENSE00002723061	27346928	27347062
ENSE00002724220	27348345	27348491

Expression profiles

Bgee: expression breadth ubiquitous, 129 present calls, max score 84.87.

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.87	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.73	gold quality
cortical plate	UBERON:0005343	73.87	gold quality
sural nerve	UBERON:0015488	72.88	gold quality
ganglionic eminence	UBERON:0004023	67.82	gold quality
superior frontal gyrus	UBERON:0002661	67.22	gold quality
bone marrow cell	CL:0002092	67.10	silver quality
ventricular zone	UBERON:0003053	65.88	gold quality
calcaneal tendon	UBERON:0003701	65.50	gold quality
nucleus accumbens	UBERON:0001882	64.13	gold quality
Ammon’s horn	UBERON:0001954	63.51	gold quality
temporal lobe	UBERON:0001871	63.37	gold quality
amygdala	UBERON:0001876	63.34	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	62.70	gold quality
hypothalamus	UBERON:0001898	62.67	gold quality
endometrium	UBERON:0001295	62.44	gold quality
tibial nerve	UBERON:0001323	62.22	gold quality
smooth muscle tissue	UBERON:0001135	62.20	gold quality
substantia nigra	UBERON:0002038	62.17	gold quality
myometrium	UBERON:0001296	62.12	gold quality
body of uterus	UBERON:0009853	61.96	gold quality
left coronary artery	UBERON:0001626	61.77	gold quality
muscle tissue	UBERON:0002385	61.69	gold quality
body of pancreas	UBERON:0001150	61.65	gold quality
endocervix	UBERON:0000458	61.61	gold quality
anterior cingulate cortex	UBERON:0009835	61.57	gold quality
Brodmann (1909) area 9	UBERON:0013540	61.56	gold quality
cerebral cortex	UBERON:0000956	61.45	gold quality
skeletal muscle tissue	UBERON:0001134	61.29	gold quality
putamen	UBERON:0001874	61.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.