LINC03156

Summary

LINC03156 (long intergenic non-protein coding RNA 3156, HGNC:49838) is a long non-coding RNA gene on chromosome 2p25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49838
Approved symbol	LINC03156
Name	long intergenic non-protein coding RNA 3156
Location	2p25.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236172
Ensembl biotype	lncRNA
Entrez	102800314
RNAcentral	URS0000759DD2 — lncRNA, 704 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 83 — 83 lncRNA

ENST00000415657, ENST00000425711, ENST00000431336, ENST00000450467, ENST00000455317, ENST00000456028, ENST00000585718, ENST00000585767, ENST00000585781, ENST00000585789, ENST00000585810, ENST00000585834, ENST00000585872, ENST00000586129, ENST00000586753, ENST00000586893, ENST00000587050, ENST00000587162, ENST00000587316, ENST00000587628, ENST00000587748, ENST00000588051, ENST00000588108, ENST00000588145, ENST00000588220, ENST00000588330, ENST00000588384, ENST00000589024, ENST00000589150, ENST00000589597, ENST00000589962, ENST00000590006, ENST00000590276, ENST00000590489, ENST00000590865, ENST00000590961, ENST00000590971, ENST00000591018, ENST00000591053, ENST00000591060, ENST00000591093, ENST00000591129, ENST00000591400, ENST00000591450, ENST00000591575, ENST00000591731, ENST00000592229, ENST00000592365, ENST00000592394, ENST00000592565, ENST00000592730, ENST00000592816, ENST00000593202, ENST00000593269, ENST00000593277, ENST00000625779, ENST00000625915, ENST00000626844, ENST00000627672, ENST00000627862, ENST00000627908, ENST00000628355, ENST00000628623, ENST00000629313, ENST00000630222, ENST00000630510, ENST00000630706, ENST00000652808, ENST00000654332, ENST00000654690, ENST00000656553, ENST00000658799, ENST00000660382, ENST00000663445, ENST00000663577, ENST00000663783, ENST00000666575, ENST00000666684, ENST00000667111, ENST00000669249, ENST00000751303, ENST00000751304, ENST00000751305

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415657 — 2 exons

Exon	Start	End
ENSE00001703137	6650106	6650444
ENSE00001767739	6649105	6649381

Expression profiles

Bgee: expression breadth broad, 99 present calls, max score 91.84.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0185 / max 14.8858, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
26733	0.0185	3

Top tissues by expression

209 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	91.84	gold quality
right testis	UBERON:0004534	91.23	gold quality
sperm	CL:0000019	89.50	gold quality
testis	UBERON:0000473	88.41	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.11	gold quality
upper arm skin	UBERON:0004263	72.84	gold quality
cardiac muscle of right atrium	UBERON:0003379	70.54	gold quality
left ventricle myocardium	UBERON:0006566	70.00	gold quality
kidney epithelium	UBERON:0004819	68.22	gold quality
adult organism	UBERON:0007023	67.53	silver quality
sural nerve	UBERON:0015488	66.69	gold quality
epithelial cell of pancreas	CL:0000083	66.19	gold quality
epithelium of nasopharynx	UBERON:0001951	65.02	gold quality
pancreatic ductal cell	CL:0002079	64.68	silver quality
ganglionic eminence	UBERON:0004023	64.27	gold quality
tibialis anterior	UBERON:0001385	61.48	silver quality
islet of Langerhans	UBERON:0000006	60.44	gold quality
ileal mucosa	UBERON:0000331	59.90	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	59.53	gold quality
adrenal tissue	UBERON:0018303	59.52	gold quality
myocardium	UBERON:0002349	58.83	gold quality
monocyte	CL:0000576	58.54	gold quality
lower lobe of lung	UBERON:0008949	58.41	silver quality
buccal mucosa cell	CL:0002336	57.49	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	57.14	gold quality
superficial temporal artery	UBERON:0001614	57.00	gold quality
cerebellar vermis	UBERON:0004720	56.06	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.72	gold quality
muscle tissue	UBERON:0002385	54.46	silver quality
vena cava	UBERON:0004087	54.30	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.