LINC03161

Summary

LINC03161 (long intergenic non-protein coding RNA 3161, HGNC:58772) is a long non-coding RNA gene on chromosome 17q25.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58772
Approved symbol	LINC03161
Name	long intergenic non-protein coding RNA 3161
Location	17q25.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	AC021683.2
Ensembl gene	ENSG00000267506
Ensembl biotype	lncRNA
Entrez	100507351

Gene structure

Transcript identifiers

Ensembl transcripts: 39 — 39 lncRNA

ENST00000590398, ENST00000591283, ENST00000592651, ENST00000623348, ENST00000649512, ENST00000662088, ENST00000666804, ENST00000701229, ENST00000715849, ENST00000715850, ENST00000715851, ENST00000715858, ENST00000715859, ENST00000715860, ENST00000827506, ENST00000827507, ENST00000827508, ENST00000827509, ENST00000827510, ENST00000827511, ENST00000827512, ENST00000827513, ENST00000827514, ENST00000827515, ENST00000827516, ENST00000827517, ENST00000827518, ENST00000827519, ENST00000827520, ENST00000827521, ENST00000827641, ENST00000827642, ENST00000827643, ENST00000827644, ENST00000827645, ENST00000827646, ENST00000827647, ENST00000827648, ENST00000827649

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000590398 — 2 exons

Exon	Start	End
ENSE00002801408	77546940	77547092
ENSE00003985062	77560945	77563244

Expression profiles

Bgee: expression breadth ubiquitous, 122 present calls, max score 91.30.

Top tissues by expression

122 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.30	gold quality
superior frontal gyrus	UBERON:0002661	79.80	gold quality
rectum	UBERON:0001052	73.10	gold quality
prefrontal cortex	UBERON:0000451	73.00	gold quality
endocervix	UBERON:0000458	71.91	gold quality
frontal cortex	UBERON:0001870	71.69	gold quality
right coronary artery	UBERON:0001625	70.91	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	69.83	gold quality
smooth muscle tissue	UBERON:0001135	69.48	gold quality
uterine cervix	UBERON:0000002	69.05	gold quality
right frontal lobe	UBERON:0002810	68.84	gold quality
lower esophagus	UBERON:0013473	68.39	gold quality
lower esophagus muscularis layer	UBERON:0035833	68.36	gold quality
endometrium	UBERON:0001295	66.84	gold quality
muscle layer of sigmoid colon	UBERON:0035805	66.48	gold quality
ectocervix	UBERON:0012249	66.28	gold quality
cerebral cortex	UBERON:0000956	66.18	gold quality
prostate gland	UBERON:0002367	66.18	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	65.71	gold quality
Brodmann (1909) area 9	UBERON:0013540	65.41	gold quality
mucosa of stomach	UBERON:0001199	65.39	gold quality
anterior cingulate cortex	UBERON:0009835	64.58	gold quality
colon	UBERON:0001155	64.47	gold quality
myometrium	UBERON:0001296	64.43	gold quality
vagina	UBERON:0000996	64.36	gold quality
body of uterus	UBERON:0009853	63.96	gold quality
right atrium auricular region	UBERON:0006631	63.91	gold quality
transverse colon	UBERON:0001157	63.63	gold quality
left coronary artery	UBERON:0001626	62.94	gold quality
apex of heart	UBERON:0002098	62.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.