LINC03162

Summary

LINC03162 (long intergenic non-protein coding RNA 3162, HGNC:58849) is a long non-coding RNA gene on chromosome 16q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58849
Approved symbol	LINC03162
Name	long intergenic non-protein coding RNA 3162
Location	16q24.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	CTD-2555A7.2
Ensembl gene	ENSG00000256982
Ensembl biotype	lncRNA
Entrez	144093419

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000537498, ENST00000669920, ENST00000766446

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000537498 — 2 exons

Exon	Start	End
ENSE00002221112	89052461	89052975
ENSE00002244645	89046172	89047820

Expression profiles

Bgee: expression breadth broad, 67 present calls, max score 79.80.

Top tissues by expression

67 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
muscle tissue	UBERON:0002385	79.80	gold quality
right hemisphere of cerebellum	UBERON:0014890	78.91	gold quality
cerebellar hemisphere	UBERON:0002245	77.86	gold quality
cerebellum	UBERON:0002037	77.83	gold quality
cerebellar cortex	UBERON:0002129	77.83	gold quality
prefrontal cortex	UBERON:0000451	69.22	gold quality
cortex of kidney	UBERON:0001225	69.21	gold quality
nucleus accumbens	UBERON:0001882	69.09	gold quality
primary visual cortex	UBERON:0002436	68.02	gold quality
frontal cortex	UBERON:0001870	67.92	gold quality
superior frontal gyrus	UBERON:0002661	67.80	gold quality
cortical plate	UBERON:0005343	66.24	gold quality
right frontal lobe	UBERON:0002810	65.97	gold quality
cerebral cortex	UBERON:0000956	65.78	gold quality
brain	UBERON:0000955	65.65	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	65.27	gold quality
anterior cingulate cortex	UBERON:0009835	65.24	gold quality
Brodmann (1909) area 9	UBERON:0013540	65.18	gold quality
putamen	UBERON:0001874	64.99	gold quality
caudate nucleus	UBERON:0001873	64.32	gold quality
ganglionic eminence	UBERON:0004023	61.85	gold quality
Ammon’s horn	UBERON:0001954	61.22	gold quality
ventricular zone	UBERON:0003053	60.91	gold quality
multicellular organism	UBERON:0000468	60.25	gold quality
tonsil	UBERON:0002372	58.44	silver quality
temporal lobe	UBERON:0001871	57.09	gold quality
amygdala	UBERON:0001876	56.96	gold quality
duodenum	UBERON:0002114	53.58	gold quality
hypothalamus	UBERON:0001898	50.86	gold quality
blood	UBERON:0000178	50.36	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.56

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.