LINC03170

Summary

LINC03170 (long intergenic non-protein coding RNA 3170, HGNC:58934) is a long non-coding RNA gene on chromosome 2p25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58934
Approved symbol	LINC03170
Name	long intergenic non-protein coding RNA 3170
Location	2p25.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.47
Ensembl gene	ENSG00000230515
Ensembl biotype	lncRNA
Entrez	144432479

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000414654, ENST00000811583, ENST00000811584, ENST00000811585, ENST00000811586, ENST00000811587, ENST00000811588, ENST00000811589, ENST00000811590, ENST00000811591

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414654 — 4 exons

Exon	Start	End
ENSE00004209647	7672082	7672266
ENSE00004209661	7671604	7671907
ENSE00004209664	7672742	7672881
ENSE00004209674	7694081	7694330

Expression profiles

Bgee: expression breadth broad, 73 present calls, max score 85.73.

Top tissues by expression

73 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.73	gold quality
cortical plate	UBERON:0005343	68.23	gold quality
monocyte	CL:0000576	61.41	gold quality
prefrontal cortex	UBERON:0000451	56.32	gold quality
lymph node	UBERON:0000029	56.26	gold quality
tonsil	UBERON:0002372	55.85	gold quality
mucosa of transverse colon	UBERON:0004991	55.69	gold quality
bone marrow	UBERON:0002371	55.35	gold quality
blood	UBERON:0000178	54.84	gold quality
urinary bladder	UBERON:0001255	49.01	gold quality
rectum	UBERON:0001052	48.98	gold quality
amygdala	UBERON:0001876	48.76	gold quality
small intestine	UBERON:0002108	47.26	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	47.20	gold quality
frontal cortex	UBERON:0001870	46.86	gold quality
small intestine Peyer’s patch	UBERON:0003454	46.74	gold quality
liver	UBERON:0002107	46.61	silver quality
calcaneal tendon	UBERON:0003701	45.66	silver quality
right lobe of liver	UBERON:0001114	45.56	silver quality
heart left ventricle	UBERON:0002084	45.46	silver quality
gastrocnemius	UBERON:0001388	45.45	silver quality
left adrenal gland	UBERON:0001234	44.87	gold quality
multicellular organism	UBERON:0000468	44.80	gold quality
left adrenal gland cortex	UBERON:0035825	44.77	gold quality
spleen	UBERON:0002106	44.74	gold quality
myometrium	UBERON:0001296	44.45	gold quality
left uterine tube	UBERON:0001303	44.35	gold quality
Brodmann (1909) area 9	UBERON:0013540	44.35	silver quality
Ammon’s horn	UBERON:0001954	44.12	gold quality
right hemisphere of cerebellum	UBERON:0014890	44.05	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.