LINC03171

Summary

LINC03171 (long intergenic non-protein coding RNA 3171, HGNC:58935) is a long non-coding RNA gene on chromosome 2p16.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58935
Approved symbol	LINC03171
Name	long intergenic non-protein coding RNA 3171
Location	2p16.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.51
Ensembl gene	ENSG00000285755
Ensembl biotype	lncRNA
Entrez	144432488

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000649346, ENST00000655725, ENST00000666406, ENST00000811252, ENST00000811253, ENST00000811254, ENST00000811255, ENST00000811256, ENST00000811257, ENST00000811258, ENST00000811259, ENST00000811260, ENST00000811261, ENST00000811262

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000649346 — 6 exons

Exon	Start	End
ENSE00003834824	57380053	57380132
ENSE00003835269	57292228	57293014
ENSE00003837035	57298199	57298489
ENSE00003839469	57294123	57294218
ENSE00003839707	57294636	57294684
ENSE00003841159	57289648	57290321

Expression profiles

Bgee: expression breadth ubiquitous, 118 present calls, max score 78.16.

Top tissues by expression

118 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.16	silver quality
corpus callosum	UBERON:0002336	71.07	gold quality
pituitary gland	UBERON:0000007	68.98	gold quality
adenohypophysis	UBERON:0002196	66.68	gold quality
bone marrow cell	CL:0002092	65.15	silver quality
ganglionic eminence	UBERON:0004023	62.25	gold quality
cortical plate	UBERON:0005343	61.01	gold quality
skeletal muscle tissue	UBERON:0001134	60.47	silver quality
ventricular zone	UBERON:0003053	58.44	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	57.86	gold quality
substantia nigra	UBERON:0002038	56.03	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.25	silver quality
islet of Langerhans	UBERON:0000006	54.94	gold quality
calcaneal tendon	UBERON:0003701	54.57	gold quality
hypothalamus	UBERON:0001898	54.26	gold quality
right adrenal gland cortex	UBERON:0035827	53.78	gold quality
lymph node	UBERON:0000029	53.47	gold quality
adrenal tissue	UBERON:0018303	53.20	gold quality
Ammon’s horn	UBERON:0001954	53.14	gold quality
bone marrow	UBERON:0002371	52.93	silver quality
prefrontal cortex	UBERON:0000451	52.63	gold quality
monocyte	CL:0000576	52.49	gold quality
pancreas	UBERON:0001264	52.29	gold quality
endometrium	UBERON:0001295	51.89	silver quality
brain	UBERON:0000955	51.56	gold quality
amygdala	UBERON:0001876	51.54	gold quality
right adrenal gland	UBERON:0001233	51.03	gold quality
vermiform appendix	UBERON:0001154	50.87	gold quality
body of pancreas	UBERON:0001150	50.60	gold quality
left adrenal gland cortex	UBERON:0035825	50.35	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.