LINC03172

Summary

LINC03172 (long intergenic non-protein coding RNA 3172, HGNC:58936) is a long non-coding RNA gene on chromosome 2p16.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58936
Approved symbol	LINC03172
Name	long intergenic non-protein coding RNA 3172
Location	2p16.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.57, uc.56, uc.55
Ensembl gene	ENSG00000233891
Ensembl biotype	lncRNA
Entrez	105374754

Gene structure

Transcript identifiers

Ensembl transcripts: 57 — 57 lncRNA

ENST00000412409, ENST00000434611, ENST00000435557, ENST00000440521, ENST00000443306, ENST00000444001, ENST00000451416, ENST00000606382, ENST00000650011, ENST00000656905, ENST00000660011, ENST00000660819, ENST00000661091, ENST00000662067, ENST00000662536, ENST00000663829, ENST00000663939, ENST00000668148, ENST00000668455, ENST00000668635, ENST00000668796, ENST00000669739, ENST00000671177, ENST00000717264, ENST00000717265, ENST00000779602, ENST00000779603, ENST00000779604, ENST00000779605, ENST00000807304, ENST00000821589, ENST00000821590, ENST00000821591, ENST00000821592, ENST00000821593, ENST00000821594, ENST00000821595, ENST00000821596, ENST00000821597, ENST00000821598, ENST00000821599, ENST00000821600, ENST00000821601, ENST00000821602, ENST00000821603, ENST00000821604, ENST00000821605, ENST00000821606, ENST00000821607, ENST00000821608, ENST00000821609, ENST00000821610, ENST00000821611, ENST00000821612, ENST00000821613, ENST00000821614, ENST00000821615

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412409 — 5 exons

Exon	Start	End
ENSE00001592816	59240942	59241103
ENSE00001652220	59594805	59594932
ENSE00001664062	59600373	59600528
ENSE00004032061	59733218	59733396
ENSE00004032065	59719576	59719657

Expression profiles

Bgee: expression breadth broad, 72 present calls, max score 87.51.

Top tissues by expression

72 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.51	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.85	gold quality
testis	UBERON:0000473	74.13	gold quality
left testis	UBERON:0004533	74.13	gold quality
right testis	UBERON:0004534	73.76	gold quality
sural nerve	UBERON:0015488	64.37	silver quality
gall bladder	UBERON:0002110	58.74	gold quality
superior frontal gyrus	UBERON:0002661	57.07	gold quality
monocyte	CL:0000576	56.36	gold quality
multicellular organism	UBERON:0000468	56.25	gold quality
tonsil	UBERON:0002372	55.94	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	55.90	gold quality
cortex of kidney	UBERON:0001225	54.56	gold quality
vermiform appendix	UBERON:0001154	54.29	gold quality
blood	UBERON:0000178	53.92	silver quality
primary visual cortex	UBERON:0002436	53.14	gold quality
liver	UBERON:0002107	52.39	silver quality
prefrontal cortex	UBERON:0000451	51.31	gold quality
pancreas	UBERON:0001264	50.39	gold quality
bone marrow	UBERON:0002371	50.25	silver quality
left coronary artery	UBERON:0001626	49.30	gold quality
adrenal gland	UBERON:0002369	49.30	gold quality
lung	UBERON:0002048	48.66	gold quality
gastrocnemius	UBERON:0001388	48.10	gold quality
tibial nerve	UBERON:0001323	48.01	gold quality
placenta	UBERON:0001987	47.93	silver quality
body of pancreas	UBERON:0001150	47.22	gold quality
stomach	UBERON:0000945	46.11	gold quality
right ovary	UBERON:0002118	45.95	gold quality
right atrium auricular region	UBERON:0006631	45.62	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.03

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.