LINC03173

Summary

LINC03173 (long intergenic non-protein coding RNA 3173, HGNC:58937) is a long non-coding RNA gene on chromosome 2p16.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58937
Approved symbol	LINC03173
Name	long intergenic non-protein coding RNA 3173
Location	2p16.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.58
Ensembl gene	ENSG00000285611
Ensembl biotype	lncRNA
Entrez	144432484

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000648464, ENST00000805377, ENST00000805378, ENST00000805379, ENST00000805380

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000648464 — 4 exons

Exon	Start	End
ENSE00003834104	60058958	60059059
ENSE00003835857	60070234	60071127
ENSE00003836892	60066424	60066584
ENSE00003838564	60057601	60057695

Expression profiles

Bgee: expression breadth broad, 23 present calls, max score 91.95.

Top tissues by expression

23 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.95	gold quality
tonsil	UBERON:0002372	56.05	silver quality
monocyte	CL:0000576	53.36	silver quality
blood	UBERON:0000178	52.22	silver quality
tibial artery	UBERON:0007610	51.79	gold quality
prefrontal cortex	UBERON:0000451	50.57	silver quality
heart left ventricle	UBERON:0002084	50.25	silver quality
liver	UBERON:0002107	47.38	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.12	silver quality
subcutaneous adipose tissue	UBERON:0002190	45.45	silver quality
heart	UBERON:0000948	45.00	silver quality
Brodmann (1909) area 9	UBERON:0013540	44.96	silver quality
brain	UBERON:0000955	44.77	silver quality
Ammon’s horn	UBERON:0001954	41.46	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	40.94	silver quality
adult mammalian kidney	UBERON:0000082	40.55	silver quality
anterior cingulate cortex	UBERON:0009835	39.89	silver quality
right atrium auricular region	UBERON:0006631	39.54	silver quality
caudate nucleus	UBERON:0001873	38.86	silver quality
skin of leg	UBERON:0001511	38.84	silver quality
right frontal lobe	UBERON:0002810	38.58	silver quality
skin of abdomen	UBERON:0001416	38.38	silver quality
right hemisphere of cerebellum	UBERON:0014890	37.05	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.