LINC03196

Summary

LINC03196 (long intergenic non-protein coding RNA 3196, HGNC:58965) is a long non-coding RNA gene on chromosome 11p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58965
Approved symbol	LINC03196
Name	long intergenic non-protein coding RNA 3196
Location	11p15.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.321
Ensembl gene	ENSG00000254789
Ensembl biotype	lncRNA
Entrez	105376568

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000533082, ENST00000636967, ENST00000657022, ENST00000727999, ENST00000728000, ENST00000728001, ENST00000728002, ENST00000728003, ENST00000728004, ENST00000728005, ENST00000728006, ENST00000728007

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000533082 — 2 exons

Exon	Start	End
ENSE00002175145	15572023	15572400
ENSE00002193425	15622305	15622391

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 92.52.

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.52	gold quality
blood	UBERON:0000178	82.10	gold quality
adult mammalian kidney	UBERON:0000082	67.76	gold quality
kidney	UBERON:0002113	67.72	gold quality
cortex of kidney	UBERON:0001225	65.10	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	64.41	gold quality
bone marrow cell	CL:0002092	63.87	silver quality
metanephros cortex	UBERON:0010533	63.87	gold quality
skeletal muscle tissue	UBERON:0001134	62.09	silver quality
vermiform appendix	UBERON:0001154	61.20	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.93	gold quality
myometrium	UBERON:0001296	58.28	gold quality
bone marrow	UBERON:0002371	58.08	gold quality
multicellular organism	UBERON:0000468	57.98	gold quality
urinary bladder	UBERON:0001255	57.45	gold quality
leukocyte	CL:0000738	57.30	gold quality
gall bladder	UBERON:0002110	56.99	gold quality
spleen	UBERON:0002106	56.97	gold quality
monocyte	CL:0000576	56.32	gold quality
placenta	UBERON:0001987	55.12	gold quality
right lung	UBERON:0002167	54.27	gold quality
apex of heart	UBERON:0002098	53.56	gold quality
lymph node	UBERON:0000029	52.73	silver quality
prefrontal cortex	UBERON:0000451	52.58	gold quality
calcaneal tendon	UBERON:0003701	52.35	gold quality
liver	UBERON:0002107	52.11	gold quality
right atrium auricular region	UBERON:0006631	51.91	gold quality
duodenum	UBERON:0002114	51.24	gold quality
uterine cervix	UBERON:0000002	50.86	silver quality
heart	UBERON:0000948	50.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.