LINC03199

Summary

LINC03199 (long intergenic non-protein coding RNA 3199, HGNC:58970) is a long non-coding RNA gene on chromosome 14q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58970
Approved symbol	LINC03199
Name	long intergenic non-protein coding RNA 3199
Location	14q12
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.362
Ensembl gene	ENSG00000257522
Ensembl biotype	lncRNA
Entrez	102724934

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000548306, ENST00000548665, ENST00000550975, ENST00000551040, ENST00000551110, ENST00000652247, ENST00000652703, ENST00000654499, ENST00000654976, ENST00000658430, ENST00000662227, ENST00000662728, ENST00000667237, ENST00000670241, ENST00000716712, ENST00000716713, ENST00000716714, ENST00000716715, ENST00000716716, ENST00000716717, ENST00000716718, ENST00000716719, ENST00000716732, ENST00000716733

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000548306 — 6 exons

Exon	Start	End
ENSE00002325925	29274753	29274781
ENSE00002350949	29381181	29381290
ENSE00004030505	29346445	29346525
ENSE00004030506	29309180	29309317
ENSE00004030517	29378293	29378456
ENSE00004030518	29317956	29318002

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 82.64.

Top tissues by expression

89 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	82.64	gold quality
bone marrow	UBERON:0002371	76.17	silver quality
skeletal muscle tissue	UBERON:0001134	74.26	silver quality
thymus	UBERON:0002370	73.80	silver quality
ganglionic eminence	UBERON:0004023	71.93	gold quality
spleen	UBERON:0002106	71.38	silver quality
superior frontal gyrus	UBERON:0002661	70.62	gold quality
sural nerve	UBERON:0015488	69.41	gold quality
prefrontal cortex	UBERON:0000451	68.67	gold quality
ventricular zone	UBERON:0003053	68.22	gold quality
frontal cortex	UBERON:0001870	66.29	gold quality
anterior cingulate cortex	UBERON:0009835	65.34	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	64.92	gold quality
Brodmann (1909) area 9	UBERON:0013540	64.35	gold quality
cerebral cortex	UBERON:0000956	64.28	gold quality
quadriceps femoris	UBERON:0001377	64.14	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.75	gold quality
cerebellar vermis	UBERON:0004720	63.05	gold quality
kidney	UBERON:0002113	62.54	silver quality
right frontal lobe	UBERON:0002810	62.05	gold quality
primary visual cortex	UBERON:0002436	60.67	gold quality
right hemisphere of cerebellum	UBERON:0014890	60.53	gold quality
cerebellar hemisphere	UBERON:0002245	58.75	gold quality
brain	UBERON:0000955	58.70	gold quality
subcutaneous adipose tissue	UBERON:0002190	58.47	silver quality
stromal cell of endometrium	CL:0002255	58.11	gold quality
myometrium	UBERON:0001296	56.02	gold quality
temporal lobe	UBERON:0001871	54.72	gold quality
Ammon’s horn	UBERON:0001954	54.66	gold quality
amygdala	UBERON:0001876	54.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.20

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.