LINC03200

Summary

LINC03200 (long intergenic non-protein coding RNA 3200, HGNC:58971) is a long non-coding RNA gene on chromosome 14q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58971
Approved symbol	LINC03200
Name	long intergenic non-protein coding RNA 3200
Location	14q12
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.363
Ensembl gene	ENSG00000258107
Ensembl biotype	lncRNA
Entrez	144511951

Gene structure

Transcript identifiers

Ensembl transcripts: 23 — 23 lncRNA

ENST00000549515, ENST00000649245, ENST00000667982, ENST00000730785, ENST00000730786, ENST00000730787, ENST00000730788, ENST00000730789, ENST00000730790, ENST00000730791, ENST00000730792, ENST00000730793, ENST00000730794, ENST00000730795, ENST00000730796, ENST00000730797, ENST00000730798, ENST00000730799, ENST00000730800, ENST00000730801, ENST00000730802, ENST00000730803, ENST00000730804

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000549515 — 4 exons

Exon	Start	End
ENSE00002326198	29436177	29436412
ENSE00002407324	29408848	29408965
ENSE00002411779	29396608	29396768
ENSE00004059635	29390290	29390477

Expression profiles

Bgee: expression breadth broad, 58 present calls, max score 84.31.

Top tissues by expression

58 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.31	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.86	gold quality
ganglionic eminence	UBERON:0004023	64.74	gold quality
hindlimb stylopod muscle	UBERON:0004252	62.85	gold quality
cortical plate	UBERON:0005343	60.18	gold quality
prefrontal cortex	UBERON:0000451	57.29	gold quality
right hemisphere of cerebellum	UBERON:0014890	53.34	gold quality
islet of Langerhans	UBERON:0000006	53.15	gold quality
blood	UBERON:0000178	53.05	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	52.79	gold quality
frontal cortex	UBERON:0001870	52.66	gold quality
Brodmann (1909) area 9	UBERON:0013540	52.34	gold quality
monocyte	CL:0000576	52.19	silver quality
cerebral cortex	UBERON:0000956	51.91	gold quality
superior frontal gyrus	UBERON:0002661	51.86	gold quality
anterior cingulate cortex	UBERON:0009835	50.95	gold quality
cerebellar hemisphere	UBERON:0002245	50.83	gold quality
brain	UBERON:0000955	50.04	gold quality
cerebellar cortex	UBERON:0002129	49.97	gold quality
primary visual cortex	UBERON:0002436	49.02	gold quality
right frontal lobe	UBERON:0002810	48.66	gold quality
thyroid gland	UBERON:0002046	48.40	gold quality
Ammon’s horn	UBERON:0001954	48.30	gold quality
nucleus accumbens	UBERON:0001882	47.88	gold quality
corpus callosum	UBERON:0002336	47.52	silver quality
gastrocnemius	UBERON:0001388	47.15	gold quality
small intestine Peyer’s patch	UBERON:0003454	46.22	silver quality
amygdala	UBERON:0001876	45.46	gold quality
body of pancreas	UBERON:0001150	45.43	silver quality
substantia nigra	UBERON:0002038	43.82	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.