LINC03204

Summary

LINC03204 (long intergenic non-protein coding RNA 3204, HGNC:58977) is a long non-coding RNA gene on chromosome 18q12.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:58977
Approved symbol	LINC03204
Name	long intergenic non-protein coding RNA 3204
Location	18q12.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	uc.431
Ensembl gene	ENSG00000285940
Ensembl biotype	lncRNA
Entrez	144511959

Gene structure

Transcript identifiers

Ensembl transcripts: 20 — 20 lncRNA

ENST00000649194, ENST00000657504, ENST00000661428, ENST00000690261, ENST00000690997, ENST00000693501, ENST00000700759, ENST00000700815, ENST00000701492, ENST00000813874, ENST00000813875, ENST00000813876, ENST00000813877, ENST00000813878, ENST00000813879, ENST00000813880, ENST00000813881, ENST00000813882, ENST00000813883, ENST00000813884

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000649194 — 9 exons

Exon	Start	End
ENSE00003831626	37760868	37762131
ENSE00003832637	37754780	37754865
ENSE00003833363	37750765	37751166
ENSE00003836751	37731164	37731387
ENSE00003837864	37733683	37733769
ENSE00003838400	37565281	37565390
ENSE00003839230	37725844	37725915
ENSE00003839685	37742695	37742956
ENSE00003840780	37753477	37753686

Expression profiles

Bgee: expression breadth broad, 67 present calls, max score 64.51.

Top tissues by expression

67 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
cortical plate	UBERON:0005343	64.51	gold quality
corpus callosum	UBERON:0002336	55.57	gold quality
right hemisphere of cerebellum	UBERON:0014890	54.86	gold quality
adenohypophysis	UBERON:0002196	54.44	gold quality
cerebellum	UBERON:0002037	54.12	gold quality
cerebellar cortex	UBERON:0002129	54.09	gold quality
cerebellar hemisphere	UBERON:0002245	53.97	gold quality
pituitary gland	UBERON:0000007	53.82	gold quality
prefrontal cortex	UBERON:0000451	53.74	gold quality
superior frontal gyrus	UBERON:0002661	52.50	gold quality
frontal cortex	UBERON:0001870	51.54	gold quality
nucleus accumbens	UBERON:0001882	51.16	gold quality
primary visual cortex	UBERON:0002436	50.77	gold quality
monocyte	CL:0000576	50.36	silver quality
brain	UBERON:0000955	50.12	gold quality
cerebral cortex	UBERON:0000956	49.92	gold quality
Brodmann (1909) area 9	UBERON:0013540	49.47	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	49.37	gold quality
hypothalamus	UBERON:0001898	49.21	gold quality
anterior cingulate cortex	UBERON:0009835	48.98	gold quality
right frontal lobe	UBERON:0002810	48.96	gold quality
multicellular organism	UBERON:0000468	48.66	gold quality
islet of Langerhans	UBERON:0000006	48.57	gold quality
blood	UBERON:0000178	47.92	gold quality
thyroid gland	UBERON:0002046	47.91	gold quality
adrenal gland	UBERON:0002369	47.62	gold quality
Ammon’s horn	UBERON:0001954	47.59	gold quality
amygdala	UBERON:0001876	47.50	gold quality
calcaneal tendon	UBERON:0003701	47.45	silver quality
vermiform appendix	UBERON:0001154	46.77	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.