LINC03209

Summary

LINC03209 (long intergenic non-protein coding RNA 3209, HGNC:59050) is a long non-coding RNA gene on chromosome 7p12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59050
Approved symbol	LINC03209
Name	long intergenic non-protein coding RNA 3209
Location	7p12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000237471
Ensembl biotype	lncRNA
Entrez	102723446

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000416708, ENST00000436056, ENST00000658576, ENST00000664963, ENST00000797062, ENST00000797063, ENST00000797064, ENST00000797065, ENST00000797066, ENST00000797067

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416708 — 3 exons

Exon	Start	End
ENSE00001608932	45978350	45978468
ENSE00001724385	45969657	45969809
ENSE00001772424	45979909	45980191

Expression profiles

Bgee: expression breadth broad, 100 present calls, max score 78.95.

Top tissues by expression

100 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.95	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.74	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.13	gold quality
bone marrow	UBERON:0002371	56.96	gold quality
leukocyte	CL:0000738	56.85	gold quality
lymph node	UBERON:0000029	56.65	gold quality
blood	UBERON:0000178	56.61	gold quality
granulocyte	CL:0000094	56.39	gold quality
vermiform appendix	UBERON:0001154	55.85	gold quality
skeletal muscle tissue	UBERON:0001134	54.75	gold quality
placenta	UBERON:0001987	54.19	gold quality
monocyte	CL:0000576	53.36	gold quality
liver	UBERON:0002107	53.12	silver quality
anterior cingulate cortex	UBERON:0009835	52.14	gold quality
cortex of kidney	UBERON:0001225	51.95	gold quality
endocervix	UBERON:0000458	51.89	gold quality
islet of Langerhans	UBERON:0000006	51.65	gold quality
tonsil	UBERON:0002372	51.36	gold quality
duodenum	UBERON:0002114	51.20	gold quality
right lobe of liver	UBERON:0001114	50.82	gold quality
urinary bladder	UBERON:0001255	50.47	gold quality
prefrontal cortex	UBERON:0000451	49.96	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	49.77	gold quality
muscle of leg	UBERON:0001383	49.73	gold quality
right testis	UBERON:0004534	49.71	gold quality
gall bladder	UBERON:0002110	49.62	gold quality
testis	UBERON:0000473	49.39	gold quality
gastrocnemius	UBERON:0001388	48.79	gold quality
left testis	UBERON:0004533	47.41	gold quality
right adrenal gland cortex	UBERON:0035827	47.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.05

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.