LINC03217

Summary

LINC03217 (long intergenic non-protein coding RNA 3217, HGNC:59080) is a long non-coding RNA gene on chromosome 9p11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59080
Approved symbol	LINC03217
Name	long intergenic non-protein coding RNA 3217
Location	9p11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000276266
Ensembl biotype	lncRNA
Entrez	107986993

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000616097, ENST00000809515, ENST00000809516, ENST00000809517, ENST00000809518, ENST00000809519

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000616097 — 5 exons

Exon	Start	End
ENSE00000895623	40612230	40612366
ENSE00001617645	40614148	40614551
ENSE00003721223	40611252	40611740
ENSE00003732359	40614792	40614942
ENSE00003750860	40622074	40622155

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 75.67.

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.67	gold quality
sural nerve	UBERON:0015488	73.74	gold quality
tonsil	UBERON:0002372	73.33	gold quality
bone marrow cell	CL:0002092	72.74	gold quality
corpus callosum	UBERON:0002336	72.12	gold quality
lower esophagus mucosa	UBERON:0035834	70.86	gold quality
colonic epithelium	UBERON:0000397	67.60	silver quality
skeletal muscle tissue	UBERON:0001134	66.85	gold quality
calcaneal tendon	UBERON:0003701	65.83	gold quality
bone marrow	UBERON:0002371	65.32	gold quality
ganglionic eminence	UBERON:0004023	61.91	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	61.77	gold quality
esophagus mucosa	UBERON:0002469	61.35	gold quality
saliva-secreting gland	UBERON:0001044	61.19	gold quality
minor salivary gland	UBERON:0001830	60.44	gold quality
ventricular zone	UBERON:0003053	59.44	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.43	gold quality
liver	UBERON:0002107	58.81	gold quality
cortical plate	UBERON:0005343	58.56	silver quality
monocyte	CL:0000576	57.29	gold quality
tibial nerve	UBERON:0001323	56.69	gold quality
esophagus	UBERON:0001043	56.52	gold quality
adrenal tissue	UBERON:0018303	56.20	gold quality
stromal cell of endometrium	CL:0002255	55.53	gold quality
uterine cervix	UBERON:0000002	55.40	gold quality
blood	UBERON:0000178	55.06	silver quality
muscle of leg	UBERON:0001383	54.78	gold quality
subcutaneous adipose tissue	UBERON:0002190	54.52	gold quality
adipose tissue	UBERON:0001013	54.45	gold quality
omental fat pad	UBERON:0010414	54.42	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.