LINC03218

Summary

LINC03218 (long intergenic non-protein coding RNA 3218, HGNC:39763) is a long non-coding RNA gene on chromosome 6p21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:39763
Approved symbol	LINC03218
Name	long intergenic non-protein coding RNA 3218
Location	6p21.32
Locus type	RNA, long non-coding
Status	Approved
Aliases	XXbac-BPG254F23.7
Ensembl gene	ENSG00000232080
Ensembl biotype	lncRNA
Entrez	102725019

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 3 lncRNA, 1 retained_intron

ENST00000448198, ENST00000458375, ENST00000585372, ENST00000621553

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000448198 — 2 exons

Exon	Start	End
ENSE00004171796	32718003	32718147
ENSE00004171797	32718590	32719170

Expression profiles

Bgee: expression breadth broad, 74 present calls, max score 88.54.

Top tissues by expression

74 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	88.54	gold quality
right testis	UBERON:0004534	88.42	gold quality
testis	UBERON:0000473	88.09	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.12	gold quality
adult mammalian kidney	UBERON:0000082	61.80	gold quality
multicellular organism	UBERON:0000468	61.48	gold quality
kidney	UBERON:0002113	61.30	gold quality
metanephros cortex	UBERON:0010533	57.73	gold quality
monocyte	CL:0000576	55.92	gold quality
blood	UBERON:0000178	55.63	gold quality
fundus of stomach	UBERON:0001160	53.47	gold quality
liver	UBERON:0002107	52.42	silver quality
gastrocnemius	UBERON:0001388	52.11	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	51.93	gold quality
tonsil	UBERON:0002372	50.63	silver quality
calcaneal tendon	UBERON:0003701	50.23	silver quality
thoracic mammary gland	UBERON:0005200	49.69	gold quality
tibial artery	UBERON:0007610	49.20	gold quality
body of pancreas	UBERON:0001150	49.16	gold quality
anterior cingulate cortex	UBERON:0009835	48.94	gold quality
corpus callosum	UBERON:0002336	48.62	silver quality
right atrium auricular region	UBERON:0006631	48.53	gold quality
ovary	UBERON:0000992	48.23	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	48.08	gold quality
heart	UBERON:0000948	47.99	gold quality
left coronary artery	UBERON:0001626	47.78	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.74	gold quality
heart left ventricle	UBERON:0002084	47.66	gold quality
right coronary artery	UBERON:0001625	47.43	gold quality
Ammon’s horn	UBERON:0001954	47.06	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.