LINC03223

Summary

LINC03223 (long intergenic non-protein coding RNA 3223, HGNC:59166) is a long non-coding RNA gene on chromosome 6p21.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:59166
Approved symbol	LINC03223
Name	long intergenic non-protein coding RNA 3223
Location	6p21.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272217
Ensembl biotype	lncRNA
Entrez	105375022

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000606432, ENST00000702229, ENST00000718232, ENST00000755753, ENST00000755754, ENST00000755755, ENST00000755756, ENST00000755757, ENST00000755758, ENST00000755759, ENST00000755760

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000606432 — 2 exons

Exon	Start	End
ENSE00003695177	33246739	33246856
ENSE00003697730	33246075	33246550

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 93.38.

Top tissues by expression

129 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	93.38	gold quality
thymus	UBERON:0002370	89.86	silver quality
cerebellar vermis	UBERON:0004720	82.35	gold quality
lower esophagus mucosa	UBERON:0035834	76.11	gold quality
granulocyte	CL:0000094	75.53	gold quality
right testis	UBERON:0004534	74.73	gold quality
left testis	UBERON:0004533	73.91	gold quality
mucosa of transverse colon	UBERON:0004991	73.39	gold quality
testis	UBERON:0000473	73.00	gold quality
bone marrow cell	CL:0002092	72.50	gold quality
quadriceps femoris	UBERON:0001377	70.50	gold quality
cerebellar hemisphere	UBERON:0002245	69.12	gold quality
cerebellar cortex	UBERON:0002129	69.07	gold quality
cerebellum	UBERON:0002037	69.06	gold quality
right hemisphere of cerebellum	UBERON:0014890	68.43	gold quality
endometrium	UBERON:0001295	68.23	gold quality
pituitary gland	UBERON:0000007	68.05	gold quality
ganglionic eminence	UBERON:0004023	67.13	gold quality
prostate gland	UBERON:0002367	66.54	gold quality
adenohypophysis	UBERON:0002196	66.46	gold quality
esophagus mucosa	UBERON:0002469	66.10	gold quality
rectum	UBERON:0001052	65.59	gold quality
right adrenal gland	UBERON:0001233	65.34	gold quality
smooth muscle tissue	UBERON:0001135	65.30	gold quality
ventricular zone	UBERON:0003053	65.24	gold quality
right lobe of thyroid gland	UBERON:0001119	65.12	gold quality
duodenum	UBERON:0002114	64.95	gold quality
thyroid gland	UBERON:0002046	64.93	gold quality
right adrenal gland cortex	UBERON:0035827	64.85	gold quality
liver	UBERON:0002107	64.84	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.