LIPC-AS1

Summary

LIPC-AS1 (LIPC antisense RNA 1, HGNC:52294) is a long non-coding RNA gene on chromosome 15q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52294
Approved symbol	LIPC-AS1
Name	LIPC antisense RNA 1
Location	15q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259293
Ensembl biotype	lncRNA
Entrez	101928694
RNAcentral	URS000075B478 — lncRNA, 2220 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000561083

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000561083 — 3 exons

Exon	Start	End
ENSE00002537068	58434890	58436912
ENSE00002539132	58498639	58498735
ENSE00002559933	58494773	58494883

Expression profiles

Bgee: expression breadth broad, 25 present calls, max score 54.42.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0162 / max 8.6753, expressed in 5 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
150222	0.0162	5

Top tissues by expression

153 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
monocyte	CL:0000576	54.42	gold quality
skin of hip	UBERON:0001554	51.39	silver quality
liver	UBERON:0002107	51.38	gold quality
islet of Langerhans	UBERON:0000006	50.59	silver quality
right lobe of liver	UBERON:0001114	50.38	gold quality
vermiform appendix	UBERON:0001154	49.12	gold quality
blood	UBERON:0000178	48.52	silver quality
metanephros cortex	UBERON:0010533	48.06	gold quality
upper leg skin	UBERON:0004262	47.36	silver quality
minor salivary gland	UBERON:0001830	47.02	gold quality
anterior cingulate cortex	UBERON:0009835	45.75	silver quality
metanephros	UBERON:0000081	45.70	gold quality
cortex of kidney	UBERON:0001225	45.00	gold quality
lymph node	UBERON:0000029	44.96	silver quality
calcaneal tendon	UBERON:0003701	44.72	silver quality
caecum	UBERON:0001153	44.69	gold quality
testis	UBERON:0000473	44.45	gold quality
adult mammalian kidney	UBERON:0000082	44.03	gold quality
kidney	UBERON:0002113	43.52	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
urinary bladder	UBERON:0001255	43.19	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
right hemisphere of cerebellum	UBERON:0014890	42.21	silver quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
skeletal muscle tissue	UBERON:0001134	41.10	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
mucosa of paranasal sinus	UBERON:0005030	40.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.