LIPG

gene
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Also known as EDL

Summary

LIPG (lipase G, endothelial type, HGNC:6623) is a protein-coding gene on chromosome 18q21.1, encoding Endothelial lipase (Q9Y5X9). Exerts both phospholipase and triglyceride lipase activities.

The protein encoded by this gene has substantial phospholipase activity and may be involved in lipoprotein metabolism and vascular biology. This protein is designated a member of the TG lipase family by its sequence and characteristic lid region which provides substrate specificity for enzymes of the TG lipase family.

Source: NCBI Gene 9388 — RefSeq curated summary.

At a glance

  • GWAS associations: 116
  • Clinical variants (ClinVar): 244 total
  • Druggable target: yes — 1 molecules with ChEMBL bioactivity
  • MANE Select transcript: NM_006033

Identifiers

Gene identifiers

FieldValue
HGNC IDHGNC:6623
Approved symbolLIPG
Namelipase G, endothelial type
Location18q21.1
Locus typegene with protein product
StatusApproved
AliasesEDL
Ensembl geneENSG00000101670
Ensembl biotypeprotein_coding
OMIM603684
Entrez9388

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 7 protein_coding, 1 non_stop_decay, 1 TEC

ENST00000261292, ENST00000427224, ENST00000577628, ENST00000579750, ENST00000580036, ENST00000583083, ENST00000623277, ENST00000931130, ENST00000959465

RefSeq mRNA: 2 — MANE Select: NM_006033 NM_001308006, NM_006033

CCDS: CCDS11938, CCDS77187

Canonical transcript exons

ENST00000261292 — 10 exons

ExonStartEnd
ENSE000010178944958141549581657
ENSE000011296774958355649583774
ENSE000011296834958236249582482
ENSE000011467774958674649586850
ENSE000011908784956943749569548
ENSE000011908844956744249567621
ENSE000012369484959050149599185
ENSE000012369654957536949575590
ENSE000026960744956205749562405
ENSE000035060854956531749565498

Expression profiles

Bgee: expression breadth ubiquitous, 195 present calls, max score 99.26.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 12.0177 / max 341.2451, expressed in 1113 samples.

FANTOM5 promoters (8 alternative TSS)

Promoter IDTPM avgSamples expressed
17023911.57251094
1702340.152054
1702370.121442
1702320.047919
1702330.042415
1702360.041610
1702380.02131
1702350.01857

Top tissues by expression

277 total, by Bgee expression score (0-100, higher = more expressed):

TissueAnatomy IDExpression scoreQuality
ventricular zoneUBERON:000305399.26gold quality
right lobe of thyroid glandUBERON:000111999.04gold quality
left lobe of thyroid glandUBERON:000112098.49gold quality
thyroid glandUBERON:000204698.28gold quality
right lobe of liverUBERON:000111494.65gold quality
ganglionic eminenceUBERON:000402394.64gold quality
pigmented layer of retinaUBERON:000178293.43gold quality
retinaUBERON:000096693.40gold quality
placentaUBERON:000198792.09gold quality
secondary oocyteCL:000065590.98gold quality
seminal vesicleUBERON:000099890.66gold quality
liverUBERON:000210789.98gold quality
oocyteCL:000002387.76gold quality
metanephros cortexUBERON:001053387.26gold quality
embryoUBERON:000092285.69gold quality
gall bladderUBERON:000211084.81gold quality
vermiform appendixUBERON:000115483.51gold quality
buccal mucosa cellCL:000233682.64silver quality
islet of LangerhansUBERON:000000682.30gold quality
rectumUBERON:000105281.04gold quality
caecumUBERON:000115378.99gold quality
cartilage tissueUBERON:000241878.20gold quality
cortical plateUBERON:000534376.54gold quality
smooth muscle tissueUBERON:000113576.17gold quality
ileal mucosaUBERON:000033175.58gold quality
mucosa of transverse colonUBERON:000499175.04gold quality
upper lobe of left lungUBERON:000895274.73gold quality
small intestine Peyer’s patchUBERON:000345474.65gold quality
colonic epitheliumUBERON:000039774.64gold quality
upper lobe of lungUBERON:000894874.36gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 1.

ExperimentMarker?Max mean expression
E-GEOD-99795no5.92
E-ANND-3no0.00

Regulation

Is transcription factor: no

Upstream regulators (CollecTRI, top): GTF3A, NFKB, NR1H3

miRNA regulators (miRDB)

97 targeting LIPG, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):

miRNAMax scoreAvg scoremiRNA target_count
HSA-LET-7A-3P100.0074.033932
HSA-LET-7B-3P100.0074.083913
HSA-LET-7F-1-3P100.0074.023928
HSA-MIR-98-3P100.0074.083907
HSA-MIR-3924100.0072.092394
HSA-MIR-190A-3P100.0080.355520
HSA-MIR-4795-3P100.0074.624024
HSA-MIR-366299.9973.825684
HSA-MIR-477599.9875.006394
HSA-MIR-23B-5P99.9866.07587
HSA-MIR-4789-5P99.9870.762721
HSA-MIR-56899.9869.862084
HSA-MIR-590-3P99.9674.346478
HSA-MIR-4666A-3P99.9671.713434
HSA-MIR-548AJ-3P99.9673.385345
HSA-MIR-548X-3P99.9673.385345
HSA-MIR-55999.9572.283609
HSA-MIR-548AB99.9571.313488
HSA-MIR-23A-5P99.9465.39468
HSA-MIR-548A-5P99.9471.273482
HSA-MIR-548AD-5P99.9471.233502
HSA-MIR-548AE-5P99.9471.233502
HSA-MIR-548AK99.9471.243488
HSA-MIR-548AM-5P99.9471.243488
HSA-MIR-548AP-5P99.9471.143489
HSA-MIR-548AQ-5P99.9471.343426
HSA-MIR-548AR-5P99.9471.283515
HSA-MIR-548AS-5P99.9471.223482
HSA-MIR-548AU-5P99.9471.243488
HSA-MIR-548AY-5P99.9471.233502

Literature-anchored findings (GeneRIF, showing 40)

  • EDL mediates both HDL binding and uptake, and the selective uptake of HDL-CE, independently of lipolysis and CLA-1. (PMID:12164779)
  • Endothelial lipase has a role in HDL metabolism [review] (PMID:12569156)
  • EL is a major determinant of HDL concentration in humans (PMID:12601178)
  • Expression of human endothelial lipase in mice results in dose-dependent increase in postheparin plasma phospholipase activity, catabolic rate of HDL-apolipoprotein, and uptake of apoA-I in both kidney and liver (PMID:14517167)
  • Hepatic expression of human EL in mice resulted in markedly decreased levels of VLDL/LDL cholesterol, phospholipid, and apoB accompanied by significantly increased LDL apolipoprotein and phospholipid catabolism. (PMID:15117821)
  • N-linked glycosylation has a role in the secretion and activity of endothelial lipase (PMID:15342690)
  • results suggest that endothelial lipase (EL) on the endothelial cell surface can promote monocyte adhesion to the vascular endothelium through the interaction with heparan sulfate proteoglycans (PMID:15485805)
  • The Endothelial lipase (EL) is a recently discovered member of the triglyceride-lipase family that is involved in plasma HDL metabolism. (PMID:15576837)
  • LIPG variants are associated with HDL related risk factors, and may play a role in susceptibility to cardiovascular disease in this population. (PMID:16023652)
  • regulatory elements in 11.4 kb of 5’ and 9.9 kb of 3’ region express in small intestine, ovary, testis, mammary gland, brain, lung, aorta, adipose tissue and adrenals; those between 27.4 and 11.4 kb of 5’ or 9.9 and 48.7 kb of 3’ region in kidney (PMID:16039280)
  • the presence of apoA-II on HDL particles inhibits the ability of endothelial lipase to influence the metabolism of HDL in vivo (PMID:16877778)
  • maternal type 1 diabetes is associated with TG accumulation and increased EL and HSL gene expression in placenta (PMID:16940551)
  • strong association between proinflammatory cytokines and plasma EL concentrations among healthy people with low or high visceral adipose tissue (VAT) levels (PMID:16980590)
  • suppression of either LPL or EL decreases proinflammatory cytokine expression and influences the lipid composition of THP-1 macrophages. (PMID:17093291)
  • N-linked glycosylation at Asn-116 reduces the ability of EL to hydrolyze lipids in LDL and HDL2 (PMID:17322565)
  • EL is the predominant TLG family member in the human placenta present at both interfaces; EL and LPL are dysregulated in growth restricted pregnancy (PMID:17356047)
  • endothelial lipase plays a role in the etiology of the atherogenic plasma lipoprotein profile characteristic of the metabolic syndrome [review] (PMID:17495604)
  • The 584C/T polymorphism of the EL gene was associated with AMI independently of HDL-C levels and thus may be involved in the pathogenesis of acute myocardial infarction (PMID:17526978)
  • phospholipase activities of EL N118A, EL N375A, & EL N473A were significantly diminished relative to that of wild-type EL, with greatest reduction being apparent for (E3)rHDL. activity of EL N62A was increased up to 6X relative to that of wild-type EL (PMID:17545692)
  • macrophages in advanced atherosclerotic lesions display high levels of endothelial lipase (EL) expression and the level of EL expression varies greatly during transformation of blood monocytes into foam cells (PMID:17570372)
  • atorvastatin reduces LPL and EL expression by reducing the activation of LXRalpha and NF-kappaB, respectively (PMID:17644777)
  • adiponectin is a significant metabolic concomitant of HTGL activity in African Americans (PMID:17651673)
  • Endothelial lipase expression promotes the binding and uptake of native and oxidized LDL in THP-1 macrophages in a heparan sulfate proteoglycan-dependent manner. (PMID:17822686)
  • The endothelial lipase 584C/T allele at codon 111 is associated with protection from coronary artery disease in a Chinese population. (PMID:17986713)
  • after stimulation, the protease activity of PC5A is enhanced, as evidenced by the cleavage of the PC5A substrates Lefty, ADAMTS-4, endothelial lipase, and PCSK9. (PMID:18039650)
  • Endothelial lipase appears to promote apolipoprotein A-I-mediated cholesterol efflux through catalytic and noncatalytic-dependent mechanisms in maacrophages. (PMID:18988890)
  • SR-BI-mediated selective uptake of HDL cholesteryl ester is essential for the remodeling of large alpha-migrating HDL particles by EL. (PMID:19136670)
  • the low-frequency Asn396Ser variant is significantly associated with increased HDL-C, while the common Thr111Ile variant is not (PMID:19287092)
  • significant gene-physical inactivity interaction for HDL & some LDL measures for LIPG i24582 polymorphism. Higher levels of physical activity may be protective for HDL-C concentrations & low activity detrimental in LIPG i24582 TT women. (PMID:19380136)
  • analysis among healthy Caucasian men and women from three independent studies does not support an association between the T111I variant and HDL-C, other plasma lipids, or risk of Coronary Heart Disease. (PMID:19411665)
  • Thus, this N-terminal variant results in reduced secretion of endothelial lipase, plausibly leading to increased HDL-C levels. (PMID:19411705)
  • The active form of EL is a homodimer in head-to-tail conformation. (PMID:19567873)
  • LPL and LIPG are reported in the human testis and in germ cell neoplasms. (PMID:19780863)
  • Statins can reduce EL expression in vitro and in vivo via inhibition of RhoA activity. The inhibition of EL expression in the vessel wall may contribute to the anti-atherogenic effects of statins. (PMID:20045866)
  • common genetic variation in endothelial lipase (LIPG) does not appear to have a role in risk for coronary artery disease and deep venous thrombosis (PMID:20466371)
  • It seems that plasma endothelial lipase levels in individuals with atherosclerosis might be higher than that measured in healthy individuals. [review] (PMID:20621031)
  • Sulforaphane inhibits endothelial lipase expression via inhibition of NF-kappaB which may have a beneficial effect on HDL cholesterol levels (PMID:20688330)
  • The LIPG 584T allele is associated with increased serum HDL-C, TC and ApoB levels. (PMID:20923576)
  • Treatment of patients with coronary artery disease with lipid-modulation and/or antiplatelet drug may significantly decrease the expression of endothelial lipase. (PMID:21122200)
  • Endothelial lipase and EL-generated lysophosphatidylcholines promote endothelial IL-8 synthesis. (PMID:21130993)

Cross-species orthologs

18 orthologs

OrganismSymbolGene ID
danio_reriolipgENSDARG00000031044
mus_musculusLipgENSMUSG00000053846
rattus_norvegicusLipgENSRNOG00000018694
drosophila_melanogasterCG5162FBGN0030828
drosophila_melanogasterCG6675FBGN0032973
drosophila_melanogasterCG6472FBGN0034166
drosophila_melanogasterCG5665FBGN0036977
drosophila_melanogastersxe2FBGN0038398
drosophila_melanogasterCG4582FBGN0039344
drosophila_melanogasterCG6296FBGN0039470
drosophila_melanogasterCG6295FBGN0039471
drosophila_melanogasterCG17192FBGN0039472
drosophila_melanogasterCG17191FBGN0039473
drosophila_melanogasterCG6283FBGN0039474
drosophila_melanogasterCG6277FBGN0039475
drosophila_melanogasterCG6271FBGN0039476
drosophila_melanogasterCG4267FBGN0264979
drosophila_melanogasterCG18258FBGN0265267

Paralogs (9): PLA1A (ENSG00000144837), LIPH (ENSG00000163898), LIPC (ENSG00000166035), LPL (ENSG00000175445), PNLIP (ENSG00000175535), PNLIPRP1 (ENSG00000187021), LIPI (ENSG00000188992), PNLIPRP3 (ENSG00000203837), PNLIPRP2 (ENSG00000266200)

Protein

Protein identifiers

Endothelial lipaseQ9Y5X9 (reviewed: Q9Y5X9)

Alternative names: Endothelial cell-derived lipase, Phospholipase A1

All UniProt accessions (5): Q9Y5X9, A0A075B751, B4DTR8, J3KTN7, J3QQQ0

UniProt curated annotations — full annotation on UniProt →

Function. Exerts both phospholipase and triglyceride lipase activities. More active as a phospholipase than a triglyceride lipase. Hydrolyzes triglycerides, both with short-chain fatty acyl groups (tributyrin) and long-chain fatty acyl groups (triolein) with similar levels of activity toward both types of substrates. Hydrolyzes high density lipoproteins (HDL) more efficiently than other lipoproteins.

Subunit / interactions. Head to tail homodimer.

Subcellular location. Secreted.

Tissue specificity. High level of expression in the liver, placenta, lung, thyroid, kidney, testis and in the corpus luteum of the ovary. Expressed also in coronary artery endothelial cells, umbilical vein endothelial cells and in hepatocytes and osteosarcoma cell lines. Not detected in heart, brain and muscle.

Activity regulation. Inhibited by serum and NaCl.

Miscellaneous. It is termed endothelial lipase due to the fact that it is synthesized in endothelial cells, a characteristic that distinguishes it from other members of the family. However, this protein is also expressed in other cell types.

Similarity. Belongs to the AB hydrolase superfamily. Lipase family.

Isoforms (2)

UniProt IDNamesCanonical?
Q9Y5X9-11yes
Q9Y5X9-22

RefSeq proteins (2): NP_001294935, NP_006024* (*=MANE)

Domains & families (InterPro)

IDNameType
IPR000734TAG_lipaseFamily
IPR001024PLAT/LH2_domDomain
IPR002330Lipo_LipaseFamily
IPR013818LipaseDomain
IPR016272Lipase_LIPHFamily
IPR029058AB_hydrolase_foldHomologous_superfamily
IPR033906Lipase_NDomain
IPR036392PLAT/LH2_dom_sfHomologous_superfamily

Pfam: PF00151, PF01477

Catalyzed reactions (Rhea), 5 shown:

  • a triacylglycerol + H2O = a diacylglycerol + a fatty acid + H(+) (RHEA:12044)
  • a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 2-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+) (RHEA:18689)
  • 1,2,3-tri-(9Z-octadecenoyl)-glycerol + H2O = di-(9Z)-octadecenoylglycerol + (9Z)-octadecenoate + H(+) (RHEA:38575)
  • 1,2,3-tributanoylglycerol + H2O = dibutanoylglycerol + butanoate + H(+) (RHEA:40475)
  • 1,2-dihexadecanoyl-sn-glycero-3-phosphocholine + H2O = hexadecanoyl-sn-glycero-3-phosphocholine + hexadecanoate + H(+) (RHEA:41384)

UniProt features (24 total): glycosylation site 5, disulfide bond 5, sequence variant 4, active site 3, splice variant 2, signal peptide 1, chain 1, domain 1, sequence conflict 1, binding site 1

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

ModelpLDDTFraction very-high
AF-Q9Y5X9-F182.760.64

Functional residue map

Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.

Catalytic / active sites (3): 169 (nucleophile); 193 (charge relay system); 274 (charge relay system)

Ligand- & substrate-binding residues (1): 325–337

Disulfide bonds (5): 64–77, 252–272, 297–316, 308–311, 463–483

Glycosylation sites (5): 469, 491, 80, 136, 393

Function

Pathways and Gene Ontology

Reactome pathways

4 pathways

IDPathway
R-HSA-8964058HDL remodeling
R-HSA-174824Plasma lipoprotein assembly, remodeling, and clearance
R-HSA-382551Transport of small molecules
R-HSA-8963899Plasma lipoprotein remodeling

MSigDB gene sets: 228 (showing top): GOBP_PHOSPHOLIPID_METABOLIC_PROCESS, GOBP_STEROL_HOMEOSTASIS, GOBP_LIPOPROTEIN_METABOLIC_PROCESS, GOCC_CELL_SURFACE, MCBRYAN_PUBERTAL_TGFB1_TARGETS_UP, GOBP_POSITIVE_REGULATION_OF_STEROL_TRANSPORT, GOBP_ORGANOPHOSPHATE_METABOLIC_PROCESS, GOBP_MONOCARBOXYLIC_ACID_METABOLIC_PROCESS, BILD_SRC_ONCOGENIC_SIGNATURE, GOBP_ORGANIC_ACID_BIOSYNTHETIC_PROCESS, GOBP_POSITIVE_REGULATION_OF_LIPID_TRANSPORT, SHEPARD_BMYB_MORPHOLINO_DN, GOBP_ORGANIC_HYDROXY_COMPOUND_TRANSPORT, GOBP_LIPID_HOMEOSTASIS, GOBP_GLYCEROLIPID_METABOLIC_PROCESS

GO Biological Process (13): lipid metabolic process (GO:0006629), fatty acid biosynthetic process (GO:0006633), response to nutrient (GO:0007584), phospholipid catabolic process (GO:0009395), positive regulation of high-density lipoprotein particle clearance (GO:0010983), triglyceride catabolic process (GO:0019433), positive regulation of cholesterol transport (GO:0032376), high-density lipoprotein particle remodeling (GO:0034375), cholesterol homeostasis (GO:0042632), reverse cholesterol transport (GO:0043691), regulation of lipoprotein metabolic process (GO:0050746), phospholipid homeostasis (GO:0055091), lipid catabolic process (GO:0016042)

GO Molecular Function (9): lipoprotein lipase activity (GO:0004465), glycerophospholipase activity (GO:0004620), triacylglycerol lipase activity (GO:0004806), heparin binding (GO:0008201), glycerophospholipid phospholipase A1 activity (GO:0008970), protein binding (GO:0005515), lipase activity (GO:0016298), hydrolase activity (GO:0016787), carboxylic ester hydrolase activity (GO:0052689)

GO Cellular Component (5): extracellular region (GO:0005576), obsolete extracellular space (GO:0005615), early endosome (GO:0005769), Golgi apparatus (GO:0005794), cell surface (GO:0009986)

Reactome top-level categories

Rollup of top-3 pathways:

CategoryPathways
Plasma lipoprotein remodeling1
Transport of small molecules1
Plasma lipoprotein assembly, remodeling, and clearance1

GO top-level categories

Rollup of top GO terms by namespace:

CategoryTerms
cholesterol transport2
hydrolase activity, acting on ester bonds2
cellular anatomical structure2
primary metabolic process1
fatty acid metabolic process1
lipid biosynthetic process1
monocarboxylic acid biosynthetic process1
response to nutrient levels1
response to chemical1
phospholipid metabolic process1
lipid catabolic process1
organophosphate catabolic process1
regulation of high-density lipoprotein particle clearance1
positive regulation of lipoprotein particle clearance1
high-density lipoprotein particle clearance1
triglyceride metabolic process1
acylglycerol catabolic process1
positive regulation of sterol transport1
regulation of cholesterol transport1
plasma lipoprotein particle remodeling1
sterol homeostasis1
lipoprotein metabolic process1
regulation of protein metabolic process1
lipid homeostasis1
lipid metabolic process1
catabolic process1
triacylglycerol lipase activity1
phospholipase activity1
lipase activity1
carboxylic ester hydrolase activity1
glycosaminoglycan binding1
sulfur compound binding1
A1-type glycerophospholipase activity1
binding1
catalytic activity1
endosome1
cytoplasm1
endomembrane system1
intracellular membrane-bounded organelle1

Protein interactions and networks

STRING

1190 interactions, top by confidence (×1000):

Protein AProtein BPartner UniProtScore
LIPGPOU2F3Q9UKI9842
LIPGAPOA1P02647832
LIPGANGPTL3Q9Y5C1777
LIPGCETPP11597764
LIPGLCATP04180692
LIPGPLTPP55058673
LIPGANGPTL8Q6UXH0637
LIPGABCA1O95477625
LIPGAPOBP04114623
LIPGAPOA5Q6Q788620
LIPGGALNT2Q10471605
LIPGLPAR3Q9UBY5590
LIPGGPIHBP1Q8IV16586
LIPGAPOC3P02656583
LIPGSCARB1Q8WTV0577

IntAct

7 interactions, top by confidence:

ABTypeScore
ETNPPLZC3HC1psi-mi:“MI:0914”(association)0.560
LIPGNRP1psi-mi:“MI:0914”(association)0.530
NEK4E2F8psi-mi:“MI:0914”(association)0.350
LIPGTOR1Bpsi-mi:“MI:0914”(association)0.350
LIPGpsi-mi:“MI:0915”(physical association)0.000
EXOSC5LIPGpsi-mi:“MI:0915”(physical association)0.000

BioGRID (82): Lipg (Affinity Capture-Western), DNAJC13 (Affinity Capture-MS), TMED4 (Affinity Capture-MS), TUBB1 (Affinity Capture-MS), TMED9 (Affinity Capture-MS), TMED5 (Affinity Capture-MS), TRMT1 (Affinity Capture-MS), PLS1 (Affinity Capture-MS), PTPRS (Affinity Capture-MS), NRP1 (Affinity Capture-MS), TMED10 (Affinity Capture-MS), TMED2 (Affinity Capture-MS), CANX (Affinity Capture-MS), ITIH2 (Affinity Capture-MS), SDC2 (Affinity Capture-MS)

ESM2 similar proteins: A1A4K5, A2BGL3, J3RZ81, O46559, O46647, P06858, P07867, P11150, P11151, P11152, P11153, P11602, P13612, P22413, P27656, P28825, P49060, P49923, P55031, P97535, Q06000, Q08761, Q13219, Q16819, Q29524, Q2TBF2, Q32PY2, Q3SZ79, Q53H76, Q5E9H0, Q5NDE3, Q5NDE4, Q5NDE5, Q5NDE8, Q5RBQ5, Q5XGE9, Q641F6, Q64230, Q64610, Q6DBU8

Diamond homologs: A0A0M3KKW3, A2VBC4, C0HLL3, O46559, P06857, P07867, P0CH47, P0CH86, P0CH87, P0DMB4, P0DMB5, P0DMB7, P0DMB8, P0DPT0, P0DSI2, P11150, P11602, P27656, P29183, P49369, P51528, P53357, P54315, P54316, P81139, Q02157, Q06478, Q3SZ79, Q3ZU95, Q5BKQ4, Q5XGE9, Q68KK0, Q6NYZ4, Q6Q249, Q6Q250, Q6Q251, Q6Q252, Q6XZB0, Q7M3V3, Q7M3V4

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

244 variants total. Per-class counts are floors (≥ shown; pagination cap):

ClassificationCount (floor)
Pathogenic0
Likely pathogenic0
Uncertain significance132
Likely benign81
Benign20

Top pathogenic / likely-pathogenic (0)

SpliceAI

1627 predictions. Top by Δscore:

VariantEffectΔscore
18:49565467:C:Gdonor_gain1.0000
18:49565496:ACGG:Adonor_loss1.0000
18:49565497:CGG:Cdonor_loss1.0000
18:49565498:GGTGA:Gdonor_loss1.0000
18:49565499:G:Tdonor_loss1.0000
18:49565500:T:Gdonor_loss1.0000
18:49567436:CTGCA:Cacceptor_loss1.0000
18:49567437:TGCA:Tacceptor_loss1.0000
18:49567438:GCA:Gacceptor_loss1.0000
18:49567439:CAGA:Cacceptor_loss1.0000
18:49567440:A:AGacceptor_gain1.0000
18:49567441:G:Aacceptor_loss1.0000
18:49567441:G:GAacceptor_gain1.0000
18:49567441:GATGA:Gacceptor_gain1.0000
18:49567603:G:GTdonor_gain1.0000
18:49567617:TGCAG:Tdonor_loss1.0000
18:49567619:CAG:Cdonor_loss1.0000
18:49567620:AGG:Adonor_loss1.0000
18:49567621:GGT:Gdonor_loss1.0000
18:49567622:G:GAdonor_loss1.0000
18:49567623:T:Adonor_loss1.0000
18:49567639:G:GTdonor_gain1.0000
18:49569432:TATAG:Tacceptor_loss1.0000
18:49569434:TA:Tacceptor_loss1.0000
18:49569435:A:ACacceptor_loss1.0000
18:49569435:A:AGacceptor_gain1.0000
18:49569436:G:GAacceptor_loss1.0000
18:49569436:G:GGacceptor_gain1.0000
18:49569436:GGA:Gacceptor_gain1.0000
18:49569549:G:Adonor_loss1.0000

AlphaMissense

3333 scored. Top likely-pathogenic:

VariantProtein changeam_pathogenicity
18:49575455:C:GH220D0.998
18:49575551:T:AC252S0.998
18:49575552:G:CC252S0.998
18:49581448:G:CR276P0.998
18:49581510:T:AC297S0.998
18:49581510:T:CC297R0.998
18:49581511:G:CC297S0.998
18:49581512:C:GC297W0.998
18:49569540:G:CR188P0.997
18:49575375:A:GD193G0.997
18:49575378:C:AP194H0.997
18:49575392:T:CF199L0.997
18:49575394:T:AF199L0.997
18:49575394:T:GF199L0.997
18:49581435:T:AC272S0.997
18:49581436:G:CC272S0.997
18:49581460:T:CL280P0.997
18:49565493:T:AW92R0.996
18:49565493:T:CW92R0.996
18:49565495:G:CW92C0.996
18:49565495:G:TW92C0.996
18:49569482:A:CS169R0.996
18:49569483:G:TS169I0.996
18:49569484:C:AS169R0.996
18:49569484:C:GS169R0.996
18:49575420:T:AL208H0.996
18:49575507:G:AG237D0.996
18:49575551:T:CC252R0.996
18:49581511:G:AC297Y0.996
18:49581511:G:TC297F0.996

dbSNP variants (sampled 300 via entrez): RS1000023797 (18:49588369 G>A), RS1000147016 (18:49563698 G>C), RS1000239096 (18:49562786 C>A), RS1000244213 (18:49568669 C>T), RS1000288514 (18:49575282 T>A), RS1000361698 (18:49575571 G>A), RS1000366022 (18:49597889 C>A), RS1000537952 (18:49562080 C>A), RS1000566837 (18:49567234 G>A), RS1000630515 (18:49564432 A>G), RS1000842811 (18:49574585 A>C,G), RS1001035163 (18:49587234 G>A), RS1001045976 (18:49592416 G>A), RS1001174069 (18:49575672 G>A,C), RS1001193138 (18:49597092 C>T)

Disease associations

OMIM: gene MIM:603684 | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

116 associations (top):

StudyTraitp-value
GCST000133_4HDL cholesterol2.000000e-07
GCST000135_1HDL cholesterol6.000000e-12
GCST000240_2HDL cholesterol5.000000e-10
GCST000285_6Cholesterol, total2.000000e-11
GCST000288_3HDL cholesterol2.000000e-11
GCST000290_2HDL cholesterol7.000000e-15
GCST000533_31Lipid metabolism phenotypes2.000000e-08
GCST000533_32Lipid metabolism phenotypes7.000000e-16
GCST000533_35Lipid metabolism phenotypes1.000000e-09
GCST000533_36Lipid metabolism phenotypes5.000000e-13
GCST000533_37Lipid metabolism phenotypes1.000000e-09
GCST000533_38Lipid metabolism phenotypes4.000000e-10
GCST000533_6Lipid metabolism phenotypes6.000000e-14
GCST000533_7Lipid metabolism phenotypes2.000000e-11
GCST000755_29HDL cholesterol3.000000e-49
GCST000760_32Cholesterol, total2.000000e-19
GCST000805_2HDL cholesterol2.000000e-12
GCST001392_12Lipid metabolism phenotypes7.000000e-11
GCST001762_97Obesity-related traits7.000000e-06
GCST002023_5Testicular germ cell tumor5.000000e-06
GCST002221_64Cholesterol, total4.000000e-18
GCST002223_13HDL cholesterol1.000000e-44
GCST002896_14Cholesterol, total1.000000e-12
GCST002899_1HDL cholesterol8.000000e-36
GCST003215_5HDL cholesterol2.000000e-09
GCST003680_18C-reactive protein levels or HDL-cholesterol levels (pleiotropy)1.000000e-15
GCST003801_3Response to selective serotonin reuptake inhibitors in depression9.000000e-07
GCST004029_30Angiotensin-converting enzyme inhibitor intolerance2.000000e-06
GCST004207_1HDL cholesterol3.000000e-09
GCST004231_5Total cholesterol levels3.000000e-13

EFO canonical traits (16, from GWAS)

EFO IDTrait name
EFO:0004612high density lipoprotein cholesterol measurement
EFO:0004574total cholesterol measurement
EFO:0004529lipid measurement
EFO:0003940physical activity
EFO:0004458C-reactive protein measurement
EFO:0005658response to selective serotonin reuptake inhibitor
EFO:0005325response to angiotensin-converting enzyme inhibitor
EFO:0008589esterified cholesterol measurement
EFO:0004614apolipoprotein A 1 measurement
EFO:0006335systolic blood pressure
EFO:0006527smoking status measurement
EFO:0004611low density lipoprotein cholesterol measurement
EFO:0004329alcohol drinking
EFO:0000195metabolic syndrome
EFO:0007874gut microbiome measurement
EFO:0009188Red cell distribution width

Drugs & pharmacology

Drug and pharmacology data

Is drug target: yes

ChEMBL targets (1): CHEMBL5080 (SINGLE PROTEIN)

Molecules with ChEMBL bioactivity

1 molecules (phase ≥1), by development phase (incl. off-target/promiscuous compounds). Patent mentions across the top 20 by phase: 38,186 (via chembl_molecule»patent_compound — counts attach to the compound, not the gene–compound relationship, so off-target/promiscuous molecules can dominate).

MoleculeNamePhasePatents
CHEMBL175247ORLISTAT438,186

PharmGKB: 1 entry (VIP=true, CPIC=false)

GtoPdb / IUPHAR curated pharmacology

(IUPHAR/BPS Guide to Pharmacology — expert-curated)

Target class: enzyme — Hydrolases & Lipases

Most potent curated ligand interactions (2 total), top 2:

LigandActionAffinityParameter
GSK-264220AIrreversible inhibition8.9pIC50
compound 12 [PMID: 31990537]Inhibition8.3pIC50

Binding affinities (BindingDB)

1052 measured of 1239 human assays (1239 total across all organisms); most potent 50 below. Values come from heterogeneous assays and are not directly comparable.

LigandMeasureValuePatent
2-[6-[4-(methoxymethyl)phenyl]-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-methoxyethyl N-[4-[2-[1-methylsulfonyl-2-oxo-2-(2-sulfamoylethylamino)ethyl]-1,3-benzothiazol-6-yl]phenyl]carbamateIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[5-(6-methoxy-3-pyridinyl)-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[5-(2-methoxy-4-pyridinyl)-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-(2-methoxyethyl)-4-[2-[1-methylsulfonyl-2-oxo-2-(2-sulfamoylethylamino)ethyl]-1,3-benzothiazol-5-yl]benzamideIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[6-(3-fluoro-2-oxo-1H-pyridin-4-yl)-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-cyclopropyl-4-[2-[2-oxo-2-(2-sulfamoylethylamino)-1-[[4-(trifluoromethoxy)phenyl]methylsulfonyl]ethyl]-1,3-benzothiazol-6-yl]benzamideIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
4-[2-[2-oxo-2-(2-sulfamoylethylamino)-1-[[4-(trifluoromethoxy)phenyl]methylsulfonyl]ethyl]-1,3-benzothiazol-6-yl]benzamideIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[5-(6-fluoro-3-pyridinyl)-1,3-benzothiazol-2-yl]-N-(2-sulfamoylethyl)-2-[[4-(trifluoromethoxy)phenyl]methylsulfonyl]acetamideIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[5-(3-acetamidophenyl)-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.5 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-methylsulfonyl-2-[6-(3-phenoxyphenyl)-1,3-benzothiazol-2-yl]-N-(2-sulfamoylethyl)acetamideIC500.6 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[5-[4-(3,3-difluoroazetidine-1-carbonyl)phenyl]-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.6 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-(2-methoxyethyl)-4-[2-[2-oxo-2-(2-sulfamoylethylamino)-1-[[4-(trifluoromethoxy)phenyl]methylsulfonyl]ethyl]-1,3-benzothiazol-6-yl]benzamideIC500.7 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-(3-hydroxypropyl)-4-[2-[1-methylsulfonyl-2-oxo-2-(2-sulfamoylethylamino)ethyl]-1,3-benzothiazol-6-yl]benzamideIC500.7 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
4-[2-[1-(cyclopropylmethylsulfonyl)-2-oxo-2-(2-sulfamoylethylamino)ethyl]-1,3-benzothiazol-6-yl]-N-(2-methoxyethyl)-N-methylbenzamideIC500.7 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[6-[4-[(3S)-3-methoxypyrrolidine-1-carbonyl]phenyl]-1,3-benzothiazol-2-yl]-N-(2-sulfamoylethyl)-2-(3,3,3-trifluoropropylsulfonyl)acetamideIC500.7 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[6-[4-(3-fluoroazetidine-1-carbonyl)phenyl]-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.7 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[5-[4-(methoxymethyl)phenyl]-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.7 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[5-(2-fluoro-3-pyridinyl)-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.7 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[6-(4-acetamidophenyl)-1,3-benzothiazol-2-yl]-N-(2-sulfamoylethyl)-2-(3,3,3-trifluoropropylsulfonyl)acetamideIC500.8 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
4-[2-[1-(cyclopropylmethylsulfonyl)-2-oxo-2-(2-sulfamoylethylamino)ethyl]-1,3-benzothiazol-6-yl]-N-(2-methoxyethyl)benzamideIC500.8 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[6-(3-chlorophenyl)-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.8 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-(2-methoxyethyl)-N-methyl-4-[2-[2-oxo-2-(2-sulfamoylethylamino)-1-[[4-(trifluoromethyl)phenyl]methylsulfonyl]ethyl]-1,3-benzothiazol-6-yl]benzamideIC500.8 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[5-(2-fluorophenyl)-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamideIC500.8 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-methylsulfonyl-2-(5-pyrimidin-2-yl-1,3-benzothiazol-2-yl)-N-(2-sulfamoylethyl)acetamideIC500.8 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
4-[2-[1-(cyclopropylmethylsulfonyl)-2-oxo-2-(2-sulfamoylethylamino)ethyl]-1,3-benzothiazol-6-yl]-N-(2-methoxy-2-methylpropyl)benzamideIC500.9 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-methylsulfonyl-2-[5-(6-oxo-1H-pyridin-3-yl)-1,3-benzothiazol-2-yl]-N-(2-sulfamoylethyl)acetamideIC501 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[(4-fluorophenyl)methylsulfonyl]-2-[5-(6-fluoro-3-pyridinyl)-1,3-benzothiazol-2-yl]-N-(2-sulfamoylethyl)acetamideIC501 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-(2-hydroxy-2-methylpropyl)-3-[2-[2-oxo-2-(2-sulfamoylethylamino)-1-(3,3,3-trifluoropropylsulfonyl)ethyl]-1,3-benzothiazol-6-yl]benzamideIC501 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-benzylsulfonyl-2-[5-methyl-6-[4-(piperidine-1-carbonyl)phenyl]-1,3-benzothiazol-2-yl]-N-(2-sulfamoylethyl)acetamideIC501 nMUS-8987314: Amide, urea or sulfone amide linked benzothiazole inhibitors of endothelial lipase
benzyl N-[4-[2-[2-[[2-(cyclopropylamino)-2-oxoethyl]amino]-1-methylsulfonyl-2-oxoethyl]-6-fluoro-1,3-benzothiazol-5-yl]phenyl]carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
benzyl N-[4-[2-[2-[[2-(cyclopropylamino)-2-oxoethyl]amino]-2-oxo-1-(3,3,3-trifluoropropylsulfonyl)ethyl]-6-fluoro-1,3-benzothiazol-5-yl]phenyl]carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
benzyl N-[4-[2-[2-[[2-(cyclopropylamino)-2-oxoethyl]amino]-1-(3-hydroxypropylsulfonyl)-2-oxoethyl]-6-fluoro-1,3-benzothiazol-5-yl]phenyl]carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
benzyl N-[4-[2-[2-[[2-(cyclopropylamino)-2-oxoethyl]amino]-1-cyclopropylsulfonyl-2-oxoethyl]-6-fluoro-1,3-benzothiazol-5-yl]phenyl]carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
benzyl N-[4-[2-[2-[[2-(cyclopropylamino)-2-oxoethyl]amino]-2-oxo-1-pentylsulfonylethyl]-5-fluoro-1,3-benzothiazol-6-yl]phenyl]carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
benzyl N-[4-[2-[2-[[2-(cyclopropylamino)-2-oxoethyl]amino]-2-oxo-1-propylsulfonylethyl]-5-fluoro-1,3-benzothiazol-6-yl]phenyl]carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
benzyl N-[4-[2-[1-(cyclohexylmethylsulfonyl)-2-[[2-(cyclopropylamino)-2-oxoethyl]amino]-2-oxoethyl]-5-fluoro-1,3-benzothiazol-6-yl]phenyl]carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-[2-(cyclopropylamino)-2-oxoethyl]-2-(3-hydroxypropylsulfonyl)-2-[6-[4-(1,3-oxazol-2-yl)phenyl]-1,3-benzothiazol-2-yl]acetamideIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-[2-(cyclopropylamino)-2-oxoethyl]-2-[5-fluoro-6-(3-pyrazol-1-ylphenyl)-1,3-benzothiazol-2-yl]-2-(3,3,3-trifluoropropylsulfonyl)acetamideIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-[2-(cyclopropylamino)-2-oxoethyl]-2-[5-fluoro-6-[4-(1H-pyrazol-5-yl)phenyl]-1,3-benzothiazol-2-yl]-2-(3,3,3-trifluoropropylsulfonyl)acetamideIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-[2-(cyclopropylamino)-2-oxoethyl]-2-[5-fluoro-6-(1-methylindazol-6-yl)-1,3-benzothiazol-2-yl]-2-methylsulfonylacetamideIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-[2-(cyclopropylamino)-2-oxoethyl]-2-[5-fluoro-6-(2-methyl-1,3-benzothiazol-5-yl)-1,3-benzothiazol-2-yl]-2-methylsulfonylacetamideIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[6-(6-fluoro-3-pyridinyl)-1,3-benzothiazol-2-yl]-2-(2-methoxyethylsulfonyl)-N-[2-oxo-2-(2-phenylmethoxyethylamino)ethyl]acetamideIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-[6-(6-fluoro-3-pyridinyl)-1,3-benzothiazol-2-yl]-2-(2-methoxyethylsulfonyl)-N-[2-oxo-2-(2-phenoxyethylamino)ethyl]acetamideIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
benzyl N-{4-[2- ({[(cyclopropyl- carbamoyl)methyl] carbamoyl}[2- (morpholin-4-yl) ethanesulfonyl] methyl)-5-fluoro- 1,3-benzothiazol- 6-yl]phenyl} carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
N-[(cyclopropyl- carbamoyl) methyl]-2- (dimethyl- sulfamoyl)-2-[4- fluoro-6-(2- methyl-1-oxo-1,2- dihydro- isoquinolin-6-yl)- 1,3-benzothiazol- 2-yl]acetamideIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
2-(6-{4-[(benzyl- carbamoyl) amino]phenyl}- 5-fluoro-1,3- benzothiazol- 2-yl)-N- [(cyclopropyl- carbamoyl) methyl]-2-(3,3,3- trifluoropropane- sulfonyl)acetamideIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
(3-cyanophenyl) methyl N-{4-[2- ({[(cyclopropyl- carbamoyl) methyl] carbamoyl}(3,3,3- trifluoropropane- sulfonyl)methyl)- 5-fluoro-1,3- benzothiazol- 6-yl]phenyl} carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
2,2,2-trifluoroethyl N-{4-[2- ({[(cyclopropyl- carbamoyl)methyl] carbamoyl}(2- methoxyethane- sulfonyl)methyl)- 5-fluoro-1,3- benzothiazol-6- yl]phenyl} carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase
cyclopropylmethyl N-{4-[2- [(cyclopropyl- carbamoyl)methyl] carbamoyl} (propane-2-sulfonyl)methyl)- 5-fluoro-1,3- benzothiazol-6-yl] phenyl}carbamateIC501 nMUS-10173991: Sulfone amide linked benzothiazole inhibitors of endothelial lipase

ChEMBL bioactivities

1304 potent at pChembl≥5 of 1327 total, top 50 by pChembl (potency: 10 = 0.1 nM, 6 = 1 µM).

pChemblTypeValueUnitMolecule
9.30IC500.5nMCHEMBL3677434
9.30IC500.5nMCHEMBL3682491
9.30IC500.5nMCHEMBL3677556
9.30IC500.5nMCHEMBL3672654
9.30IC500.5nMCHEMBL3677634
9.30IC500.5nMCHEMBL3677528
9.30IC500.5nMCHEMBL3677557
9.30IC500.5nMCHEMBL3677433
9.30IC500.5nMCHEMBL3672653
9.30IC500.5nMCHEMBL3677439
9.30IC500.5nMCHEMBL4460663
9.22IC500.6nMCHEMBL3677540
9.22IC500.6nMCHEMBL3677646
9.15IC500.7nMCHEMBL3677617
9.15IC500.7nMCHEMBL3677457
9.15IC500.7nMCHEMBL3682444
9.15IC500.7nMCHEMBL3682490
9.15IC500.7nMCHEMBL3677629
9.15IC500.7nMCHEMBL3682495
9.15IC500.7nMCHEMBL3677541
9.10IC500.8nMCHEMBL3672645
9.10IC500.8nMCHEMBL3677458
9.10IC500.8nMCHEMBL3677538
9.10IC500.8nMCHEMBL3677614
9.10IC500.8nMCHEMBL3682486
9.10IC500.8nMCHEMBL3682466
9.05IC500.9nMCHEMBL3677572
9.05IC500.9nMCHEMBL4563019
9.00IC501nMCHEMBL3682462
9.00IC501nMCHEMBL3682459
9.00IC501nMCHEMBL3677530
9.00IC501nMCHEMBL3677635
9.00IC501nMCHEMBL4471611
9.00IC501nMCHEMBL4460999
9.00IC501nMCHEMBL5956748
9.00IC501nMCHEMBL5828535
9.00IC501nMCHEMBL5963511
9.00IC501nMCHEMBL5943145
9.00IC501nMCHEMBL6028347
9.00IC501nMCHEMBL6035951
9.00IC501nMCHEMBL6008474
9.00IC501nMCHEMBL5748044
9.00IC501nMCHEMBL5915088
9.00IC501nMCHEMBL5822600
9.00IC501nMCHEMBL5838092
9.00IC501nMCHEMBL5792449
9.00IC501nMCHEMBL5752680
9.00IC501nMCHEMBL5925040
9.00IC501nMCHEMBL5803110
9.00IC501nMCHEMBL5741870

PubChem BioAssay actives

264 with measured affinity, of 348 total; 50 most potent distinct compounds. Largely complementary to BindingDB; screening values are coarse (µM, 4 dp), so sub-nM hits tie at the floor.

CompoundAssayTypeValueUnit
4-[6-fluoro-2-[5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole-2-carbonyl]-1,3-benzothiazol-5-yl]-N-(2,2,2-trifluoroethyl)benzamide1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0005uM
2-[5-fluoro-6-(1-oxo-2,3-dihydroisoindol-5-yl)-1,3-benzothiazole-2-carbonyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0005uM
5-fluoro-2-[5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole-2-carbonyl]-N-(2,2,2-trifluoroethyl)-1,3-benzothiazole-6-carboxamide1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0005uM
2-[6-fluoro-5-(1-oxo-2,3-dihydroisoindol-5-yl)-1,3-benzothiazole-2-carbonyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0005uM
4-[2-fluoro-4-[5-fluoro-2-[5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole-2-carbonyl]-1,3-benzothiazol-6-yl]benzoyl]morpholine1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0009uM
benzyl N-[4-[2-[1-cyano-2-[[2-(cyclopropylamino)-2-oxoethyl]amino]-2-oxoethyl]-1,3-benzothiazol-6-yl]phenyl]carbamate1601382: Inhibition of endothelial lipase (unknown origin)ic500.0010uM
2-[5-fluoro-6-(6-fluoro-3-pyridinyl)-1,3-benzothiazole-2-carbonyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0010uM
1-benzyl-N-[3-(3,4-dichlorophenyl)propyl]-4-hydroxy-5-oxo-2H-pyrrole-3-carboxamide1384994: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0036uM
2-(3-phenylpropyl)-3-(trifluoromethyl)-1-azatricyclo[6.3.1.04,12]dodeca-2,4,6,8(12)-tetraen-6-amine1056400: Inhibition of human endothelial lipase using PLAi as substrate measured for 30 mins by cell-based fluorescence assayic500.0040uM
N-[2-(cyclopropylamino)-2-oxoethyl]-2-[6-(6-fluoro-3-pyridinyl)-1,3-benzothiazol-2-yl]-2-(2-methoxyethylsulfonyl)acetamide1591499: Inhibition of human endothelial lipase derived from human HT1080 cell conditioned media using PED-A1 as substrate incubated for 20 mins and measured every 20 secs for 10 mins by FRET assayic500.0046uM
2-[6-(6-fluoro-3-pyridinyl)-1,3-benzothiazol-2-yl]-2-methylsulfonyl-N-(2-sulfamoylethyl)acetamide1591499: Inhibition of human endothelial lipase derived from human HT1080 cell conditioned media using PED-A1 as substrate incubated for 20 mins and measured every 20 secs for 10 mins by FRET assayic500.0050uM
2-(6-phenyl-1,3-benzothiazole-2-carbonyl)-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0050uM
2-cyano-N-[2-(cyclopropylamino)-2-oxoethyl]-2-[6-(1-oxo-2,3-dihydroisoindol-5-yl)-1,3-benzothiazol-2-yl]acetamide1601382: Inhibition of endothelial lipase (unknown origin)ic500.0053uM
N-[3-(3,4-dichlorophenyl)propyl]-4-hydroxy-5-oxo-1-(2-phenoxyethyl)-2H-pyrrole-3-carboxamide1384994: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0054uM
Orlistat1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0060uM
2-[(6-phenyl-1,3-benzothiazol-2-yl)methyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1586811: Inhibition of human endothelial lipase using HDL as substrate measured after 4 hrsic500.0060uM
N-[2-(cyclopropylamino)-2-oxoethyl]-2-[6-(6-fluoro-3-pyridinyl)-1,3-benzothiazol-2-yl]-2-methylsulfonylacetamide1591511: Inhibition of human endothelial lipase using D31-POPC-HDL as substrate incubated for 2 hrs in presence of human serum by LC/MS analysisic500.0070uM
methyl N-[4-[2-[5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole-2-carbonyl]-1,3-benzothiazol-6-yl]phenyl]carbamate1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0100uM
5-[[5-[methylsulfonyl-[6-[4-(morpholine-4-carbonyl)phenyl]-1,3-benzothiazol-2-yl]methyl]-1,3,4-oxadiazol-2-yl]methyl]-1,3-thiazolidine-2,4-dione1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
5-methyl-5-[[5-[methylsulfonyl-(6-phenyl-1,3-benzothiazol-2-yl)methyl]-1,3,4-oxadiazol-2-yl]methyl]imidazolidine-2,4-dione1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
2-[6-(4-fluorophenyl)-1,3-benzothiazole-2-carbonyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0100uM
N-[3-(3,4-dichlorophenyl)propyl]-1-ethyl-4-(methylamino)-5-oxo-2H-pyrrole-3-carboxamide1384994: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
2-[methylsulfonyl-(6-phenyl-1,3-benzothiazol-2-yl)methyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
2-[benzylsulfonyl-(6-phenyl-1,3-benzothiazol-2-yl)methyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
2-methylsulfonyl-2-[6-[1-(2-morpholin-4-ylethyl)pyrazol-4-yl]-1,3-benzothiazol-2-yl]-N-(2-sulfamoylethyl)acetamide1591499: Inhibition of human endothelial lipase derived from human HT1080 cell conditioned media using PED-A1 as substrate incubated for 20 mins and measured every 20 secs for 10 mins by FRET assayic500.0100uM
2-methylsulfonyl-2-(6-phenyl-1,3-benzothiazol-2-yl)-N-(2-sulfamoylethyl)acetamide1591499: Inhibition of human endothelial lipase derived from human HT1080 cell conditioned media using PED-A1 as substrate incubated for 20 mins and measured every 20 secs for 10 mins by FRET assayic500.0100uM
2-methylsulfonyl-2-[6-[4-(morpholine-4-carbonyl)phenyl]-1,3-benzothiazol-2-yl]-N-(2-sulfamoylethyl)acetamide1591499: Inhibition of human endothelial lipase derived from human HT1080 cell conditioned media using PED-A1 as substrate incubated for 20 mins and measured every 20 secs for 10 mins by FRET assayic500.0100uM
2-[(6-phenyl-1,3-benzothiazol-2-yl)-(3,3,3-trifluoropropylsulfonyl)methyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
2-[benzylsulfonyl-[6-(3-chlorophenyl)-1,3-benzothiazol-2-yl]methyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
2-[(6-phenyl-1,3-benzothiazol-2-yl)-propan-2-ylsulfonylmethyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
2-[benzylsulfonyl-[6-(3,4-dichlorophenyl)-1,3-benzothiazol-2-yl]methyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
4-[2-[benzylsulfonyl-[5-[(sulfamoylamino)methyl]-1,3,4-oxadiazol-2-yl]methyl]-1,3-benzothiazol-6-yl]-2-chloro-N,N-dimethylbenzamide1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
5-[[5-[methylsulfonyl-(6-phenyl-1,3-benzothiazol-2-yl)methyl]-1,3,4-oxadiazol-2-yl]methyl]-1,3-thiazolidine-2,4-dione1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
2-[2-methoxyethylsulfonyl-(6-phenyl-1,3-benzothiazol-2-yl)methyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
4-[4-[2-[benzylsulfonyl-[5-[(sulfamoylamino)methyl]-1,3,4-oxadiazol-2-yl]methyl]-1,3-benzothiazol-6-yl]-2-chlorobenzoyl]morpholine1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0100uM
5-methyl-5-[[5-[methylsulfonyl-[6-[4-(morpholine-4-carbonyl)phenyl]-1,3-benzothiazol-2-yl]methyl]-1,3,4-oxadiazol-2-yl]methyl]imidazolidine-2,4-dione1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0120uM
2-cyano-N-[2-(cyclopropylamino)-2-oxoethyl]-2-(6-phenyl-1,3-benzothiazol-2-yl)acetamide1601382: Inhibition of endothelial lipase (unknown origin)ic500.0130uM
6-methoxy-2-(2-phenylethyl)-3-(trifluoromethyl)-1-azatricyclo[6.3.1.04,12]dodeca-2,4,6,8(12)-tetraene1056400: Inhibition of human endothelial lipase using PLAi as substrate measured for 30 mins by cell-based fluorescence assayic500.0140uM
2-[6-[4-(azetidine-1-carbonyl)phenyl]-1,3-benzothiazol-2-yl]-2-cyano-N-[2-(cyclopropylamino)-2-oxoethyl]acetamide1601382: Inhibition of endothelial lipase (unknown origin)ic500.0150uM
2-cyano-N-[2-(cyclopropylamino)-2-oxoethyl]-2-[6-[3-(piperidine-1-carbonyl)phenyl]-1,3-benzothiazol-2-yl]acetamide1601382: Inhibition of endothelial lipase (unknown origin)ic500.0160uM
5-amino-2,4-dioxo-N-[(1R)-5-phenylmethoxy-2,3-dihydro-1H-inden-1-yl]-1H-pyrimidine-6-carboxamide1530293: Inhibition of recombinant human endothelial lipase expressed in African green monkey COS7 cells using HDL as substrate pretreated for 10 mins followed by substrate addition and measured after 30 mins by LC/MS/MS analysisic500.0170uM
N-[3-(3,4-dichlorophenyl)propyl]-1-ethyl-5-oxo-4-(2-propan-2-yloxyethylamino)-2H-pyrrole-3-carboxamide1384994: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0190uM
N-[3-(3,4-dichlorophenyl)propyl]-4-hydroxy-5-oxo-1-[3-(2-oxopyrrolidin-1-yl)propyl]-2H-pyrrole-3-carboxamide1384994: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0190uM
2-[[methyl(sulfamoyl)amino]methyl]-5-(6-phenyl-1,3-benzothiazole-2-carbonyl)-1,3,4-oxadiazole1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0200uM
[5-[(methylsulfamoylamino)methyl]-1,3,4-oxadiazol-2-yl]-(6-phenyl-1,3-benzothiazol-2-yl)methanone1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0200uM
2-[6-(3-oxo-1,2-dihydroisoindol-5-yl)-1,3-benzothiazole-2-carbonyl]-5-[(sulfamoylamino)methyl]-1,3,4-oxadiazole1529147: Inhibition of EL in human HT1080 cells using A10070 as substrate preincubated for 20 min followed by DMPG vesicle doped substrate addition and measured at 20 secs interval for 10 mins by fluorescence assayic500.0200uM
5-amino-2,4-dioxo-N-[4-(4-phenylmethoxyphenyl)cyclohexyl]-1H-pyrimidine-6-carboxamide1530293: Inhibition of recombinant human endothelial lipase expressed in African green monkey COS7 cells using HDL as substrate pretreated for 10 mins followed by substrate addition and measured after 30 mins by LC/MS/MS analysisic500.0210uM
methyl N-[4-[2-[benzylsulfonyl-[5-[(sulfamoylamino)methyl]-1,3,4-oxadiazol-2-yl]methyl]-1,3-benzothiazol-6-yl]phenyl]carbamate1586813: Inhibition of endothelial lipase in human HT1080 cells using PED-A1 containing DMPG vesicles as substrate pretreated for 20 mins followed by substrate addition and measured every 20 secs for 10 mins by fluorescence assayic500.0210uM
S-[(5-phenyl-1,3,4-oxadiazol-2-yl)methyl] N-[5-(3,5-difluorophenoxy)pentyl]carbamothioate746240: Time dependent inhibition of human EL (19 to 500) expressed in HEK293 cells using PED-A1 as substrate by spectrophotometryic500.0230uM
2-benzylsulfonyl-N-[2-(cyclopropylamino)-2-oxoethyl]-2-[6-(6-fluoro-3-pyridinyl)-1,3-benzothiazol-2-yl]acetamide1591499: Inhibition of human endothelial lipase derived from human HT1080 cell conditioned media using PED-A1 as substrate incubated for 20 mins and measured every 20 secs for 10 mins by FRET assayic500.0250uM

CTD chemical–gene interactions

70 total (human), top 30 by PubMed support.

ChemicalActions (top 5)PubMed papers
sodium arsenitedecreases expression, affects cotreatment, increases abundance3
Benzo(a)pyrenedecreases expression, decreases methylation3
Estradiolincreases expression, decreases expression, affects cotreatment3
Resveratrolaffects cotreatment, decreases expression2
Acetaminophendecreases expression2
Nickelincreases expression2
Silicon Dioxideincreases expression2
Valproic Aciddecreases expression2
Cyclosporineaffects expression, decreases expression2
Aflatoxin B1affects expression, decreases expression2
sotorasibaffects cotreatment, decreases expression1
methyleugenoldecreases expression1
bisphenol Adecreases expression, increases expression1
2-methyl-4-isothiazolin-3-oneincreases expression1
ethyl-p-hydroxybenzoateincreases expression1
o,p’-DDTdecreases expression1
perfluorooctanoic acidincreases expression1
benzo(e)pyreneincreases methylation1
periodate-oxidized adenosineaffects expression1
resorcinolincreases expression1
hydroquinoneincreases expression1
1-O-hexadecyl-2-arachidonyl-sn-glycero-3-phosphocholineincreases hydrolysis1
perfluoro-n-nonanoic aciddecreases expression1
4-nitro-3-(octanoyloxy)benzoic acidincreases hydrolysis1
monomethylarsonous aciddecreases expression1
T0901317increases expression1
4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamideaffects cotreatment, decreases expression1
belinostataffects cotreatment, decreases expression1
ICG 001decreases expression1
ormosilaffects binding, increases expression1

ChEMBL screening assays

51 unique, capped per target: 51 binding

Representative assays (with source publication via chembl_document):

Assay IDTypeDescriptionSource paper
CHEMBL1015044BindingInhibition of endothelial lipase by cell based assayDesign, synthesis, and biological evaluation of (2R,alphaS)-3,4-dihydro-2-[3-(1,1,2,2-tetrafluoroethoxy)phenyl]-5-[3-(trifluoromethoxy)-phenyl]-alpha-(trifluoromethyl)-1(2H)-quinolineethanol as potent and orally active cholesteryl ester transfer protein inhibitor. — J Med Chem

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.

  • Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): testicular cancer