LMBRD2
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Also known as DKFZp434H2226
Summary
LMBRD2 (LMBR1 domain containing 2, HGNC:25287) is a protein-coding gene on chromosome 5p13.2, encoding G-protein coupled receptor-associated protein LMBRD2 (Q68DH5). Recruited to ligand-activated beta-2 adrenergic receptor/ADRB2, it negatively regulates the adrenergic receptor signaling pathway.
Involved in adrenergic receptor signaling pathway. Located in membrane.
Source: NCBI Gene 92255 — RefSeq curated summary.
At a glance
- Gene–disease (curated): developmental delay with variable neurologic and brain abnormalities (Strong, GenCC) — +2 more curated relationships
- GWAS associations: 2
- Clinical variants (ClinVar): 159 total — 8 likely-pathogenic
- Phenotypes (HPO): 34
- MANE Select transcript:
NM_001007527
Identifiers
Gene identifiers
| Field | Value |
|---|---|
| HGNC ID | HGNC:25287 |
| Approved symbol | LMBRD2 |
| Name | LMBR1 domain containing 2 |
| Location | 5p13.2 |
| Locus type | gene with protein product |
| Status | Approved |
| Aliases | DKFZp434H2226 |
| Ensembl gene | ENSG00000164187 |
| Ensembl biotype | protein_coding |
| OMIM | 619490 |
| Entrez | 92255 |
Gene structure
Transcript identifiers
Ensembl transcripts: 7 — 5 protein_coding, 2 retained_intron
ENST00000296603, ENST00000503535, ENST00000505524, ENST00000885486, ENST00000885487, ENST00000955895, ENST00000955896
RefSeq mRNA: 1 — MANE Select: NM_001007527
NM_001007527
CCDS: CCDS34145
Canonical transcript exons
ENST00000296603 — 18 exons
| Exon | Start | End |
|---|---|---|
| ENSE00001082221 | 36115015 | 36115120 |
| ENSE00001082222 | 36108534 | 36108639 |
| ENSE00001082223 | 36114424 | 36114521 |
| ENSE00001082225 | 36105068 | 36105197 |
| ENSE00001082227 | 36098407 | 36104106 |
| ENSE00001400268 | 36124191 | 36124265 |
| ENSE00001400784 | 36122848 | 36122961 |
| ENSE00001401310 | 36137274 | 36137441 |
| ENSE00001404422 | 36116460 | 36116593 |
| ENSE00001404739 | 36122280 | 36122463 |
| ENSE00001407018 | 36117735 | 36117916 |
| ENSE00001427226 | 36151556 | 36151887 |
| ENSE00001427793 | 36143176 | 36143406 |
| ENSE00001428439 | 36142502 | 36142599 |
| ENSE00001430246 | 36141107 | 36141202 |
| ENSE00001433850 | 36136309 | 36136519 |
| ENSE00003527696 | 36111155 | 36111258 |
| ENSE00003550968 | 36109945 | 36109991 |
Expression profiles
Bgee: expression breadth ubiquitous, 259 present calls, max score 97.97.
FANTOM5 (CAGE): breadth ubiquitous, TPM avg 10.0277 / max 129.1825, expressed in 1720 samples.
FANTOM5 promoters (3 alternative TSS)
| Promoter ID | TPM avg | Samples expressed |
|---|---|---|
| 61305 | 9.5180 | 1710 |
| 61304 | 0.3377 | 121 |
| 61306 | 0.1719 | 63 |
Top tissues by expression
261 total, by Bgee expression score (0-100, higher = more expressed):
| Tissue | Anatomy ID | Expression score | Quality |
|---|---|---|---|
| Brodmann (1909) area 23 | UBERON:0013554 | 97.97 | gold quality |
| middle temporal gyrus | UBERON:0002771 | 97.69 | gold quality |
| Brodmann (1909) area 46 | UBERON:0006483 | 97.52 | gold quality |
| endothelial cell | CL:0000115 | 96.73 | gold quality |
| postcentral gyrus | UBERON:0002581 | 96.67 | gold quality |
| parietal lobe | UBERON:0001872 | 96.11 | gold quality |
| deltoid | UBERON:0001476 | 96.08 | gold quality |
| tibialis anterior | UBERON:0001385 | 95.94 | gold quality |
| entorhinal cortex | UBERON:0002728 | 95.94 | gold quality |
| left ventricle myocardium | UBERON:0006566 | 95.77 | gold quality |
| ileal mucosa | UBERON:0000331 | 95.76 | gold quality |
| superior frontal gyrus | UBERON:0002661 | 95.37 | gold quality |
| cardiac muscle of right atrium | UBERON:0003379 | 95.29 | gold quality |
| lateral nuclear group of thalamus | UBERON:0002736 | 95.07 | gold quality |
| biceps brachii | UBERON:0001507 | 94.54 | gold quality |
| skeletal muscle tissue of biceps brachii | UBERON:0004502 | 94.38 | gold quality |
| myocardium | UBERON:0002349 | 94.18 | gold quality |
| calcaneal tendon | UBERON:0003701 | 93.06 | gold quality |
| vastus lateralis | UBERON:0001379 | 93.00 | gold quality |
| substantia nigra pars reticulata | UBERON:0001966 | 92.67 | gold quality |
| kidney epithelium | UBERON:0004819 | 92.65 | gold quality |
| substantia nigra pars compacta | UBERON:0001965 | 92.60 | gold quality |
| quadriceps femoris | UBERON:0001377 | 92.51 | gold quality |
| jejunal mucosa | UBERON:0000399 | 92.32 | gold quality |
| lateral globus pallidus | UBERON:0002476 | 92.27 | gold quality |
| superior vestibular nucleus | UBERON:0007227 | 92.13 | gold quality |
| dorsal plus ventral thalamus | UBERON:0001897 | 92.05 | gold quality |
| pons | UBERON:0000988 | 92.03 | gold quality |
| upper leg skin | UBERON:0004262 | 91.42 | gold quality |
| heart right ventricle | UBERON:0002080 | 91.40 | gold quality |
Single-cell (SCXA)
Detected in 1 experiment(s), a significant marker in 0.
| Experiment | Marker? | Max mean expression |
|---|---|---|
| E-ANND-3 | no | 6.32 |
Regulation
Is transcription factor: no
miRNA regulators (miRDB)
84 targeting LMBRD2, top 30 by miRDB confidence (max_score; target_count = how many genes the miRNA targets in total — lower means more specific):
| miRNA | Max score | Avg score | miRNA target_count |
|---|---|---|---|
| HSA-MIR-9-5P | 100.00 | 72.28 | 2361 |
| HSA-MIR-450A-1-3P | 100.00 | 69.33 | 1837 |
| HSA-MIR-4795-3P | 100.00 | 74.62 | 4024 |
| HSA-MIR-4262 | 100.00 | 73.26 | 3931 |
| HSA-MIR-1252-5P | 100.00 | 69.80 | 2774 |
| HSA-MIR-4668-3P | 100.00 | 68.74 | 2635 |
| HSA-MIR-340-5P | 100.00 | 72.50 | 4437 |
| HSA-MIR-5692B | 100.00 | 71.32 | 2622 |
| HSA-MIR-5692C | 100.00 | 71.32 | 2622 |
| HSA-MIR-3646 | 100.00 | 73.56 | 5283 |
| HSA-MIR-181A-5P | 99.99 | 72.96 | 2995 |
| HSA-MIR-181B-5P | 99.99 | 72.97 | 2996 |
| HSA-MIR-181C-5P | 99.99 | 72.95 | 2996 |
| HSA-MIR-181D-5P | 99.99 | 73.04 | 2997 |
| HSA-MIR-548AW | 99.99 | 72.57 | 3559 |
| HSA-MIR-520D-5P | 99.98 | 73.34 | 4883 |
| HSA-MIR-524-5P | 99.98 | 73.43 | 4882 |
| HSA-MIR-499A-5P | 99.98 | 70.79 | 1323 |
| HSA-MIR-3658 | 99.96 | 73.87 | 4379 |
| HSA-MIR-5688 | 99.96 | 73.23 | 4504 |
| HSA-MIR-495-3P | 99.96 | 72.81 | 4197 |
| HSA-MIR-3910 | 99.95 | 71.13 | 2227 |
| HSA-MIR-145-5P | 99.92 | 71.13 | 1836 |
| HSA-MIR-5195-3P | 99.92 | 70.92 | 1877 |
| HSA-MIR-7-1-3P | 99.91 | 71.53 | 4384 |
| HSA-MIR-7-2-3P | 99.91 | 71.40 | 4394 |
| HSA-MIR-380-3P | 99.89 | 70.18 | 1978 |
| HSA-MIR-124-3P | 99.89 | 73.74 | 3043 |
| HSA-MIR-506-3P | 99.89 | 73.55 | 3057 |
| HSA-MIR-5003-3P | 99.85 | 69.29 | 2517 |
Literature-anchored findings (GeneRIF, showing 1)
- De novo missense variants in LMBRD2 are associated with developmental and motor delays, brain structure abnormalities and dysmorphic features. (PMID:32820033)
Cross-species orthologs
6 orthologs
| Organism | Symbol | Gene ID |
|---|---|---|
| danio_rerio | lmbrd2b | ENSDARG00000017312 |
| danio_rerio | lmbrd2a | ENSDARG00000099566 |
| mus_musculus | Lmbrd2 | ENSMUSG00000039704 |
| rattus_norvegicus | Lmbrd2 | ENSRNOG00000054751 |
| drosophila_melanogaster | CG8135 | FBGN0037689 |
| caenorhabditis_elegans | WBGENE00008165 |
Protein
Protein identifiers
G-protein coupled receptor-associated protein LMBRD2 — Q68DH5 (reviewed: Q68DH5)
Alternative names: LMBR1 domain-containing protein 2
All UniProt accessions (1): Q68DH5
UniProt curated annotations — full annotation on UniProt →
Function. Recruited to ligand-activated beta-2 adrenergic receptor/ADRB2, it negatively regulates the adrenergic receptor signaling pathway. May also regulate other G-protein coupled receptors including type-1 angiotensin II receptor/AGTR1.
Subcellular location. Cell membrane.
Disease relevance. Developmental delay with variable neurologic and brain abnormalities (DENBA) [MIM:619694] An autosomal dominant disorder characterized by onset of motor and speech delay in early childhood. Disease severity and clinical manifestations are highly variable. Most patients have delayed walking and variably impaired intellectual development. Additional features may include seizures, spasticity, and ocular abnormalities. Brain imaging often shows thin corpus callosum and may show white matter atrophy, myelination abnormalities, or enlarged ventricles. The disease is caused by variants affecting the gene represented in this entry.
Similarity. Belongs to the LIMR family.
RefSeq proteins (1): NP_001007528* (*=MANE)
Domains & families (InterPro)
| ID | Name | Type |
|---|---|---|
| IPR006876 | LMBR1-like_membr_prot | Family |
| IPR051584 | GPCR-associated_LMBR1 | Family |
Pfam: PF04791
UniProt features (34 total): topological domain 10, transmembrane region 9, sequence variant 7, region of interest 2, coiled-coil region 2, chain 1, compositionally biased region 1, modified residue 1, glycosylation site 1
Structure
Experimental structures (PDB)
0 structures.
Predicted structure (AlphaFold)
| Model | pLDDT | Fraction very-high |
|---|---|---|
| AF-Q68DH5-F1 | 76.95 | 0.33 |
Functional residue map
Curated UniProt residues grouped by drug-discovery relevance — catalytic, ligand-binding, modification, and mutation-validated positions. Source: UniProtKB sequence features.
Post-translational modifications (1): 633
Glycosylation sites (1): 78
Function
Pathways and Gene Ontology
Reactome pathways
0 pathways
MSigDB gene sets: 142 (showing top):
AAGCCAT_MIR135A_MIR135B, CATTTCA_MIR203, GOBP_ADRENERGIC_RECEPTOR_SIGNALING_PATHWAY, BASAKI_YBX1_TARGETS_DN, ZHANG_BREAST_CANCER_PROGENITORS_UP, TGCCTTA_MIR124A, AACTGGA_MIR145, MARSON_BOUND_BY_E2F4_UNSTIMULATED, KRIGE_RESPONSE_TO_TOSEDOSTAT_24HR_UP, GOBP_G_PROTEIN_COUPLED_RECEPTOR_SIGNALING_PATHWAY, RAO_BOUND_BY_SALL4, STK33_SKM_UP, STK33_UP, FEV_TARGET_GENES, ZSCAN31_TARGET_GENES
GO Biological Process (1): adrenergic receptor signaling pathway (GO:0071875)
GO Molecular Function (0):
GO Cellular Component (2): plasma membrane (GO:0005886), membrane (GO:0016020)
GO top-level categories
Rollup of top GO terms by namespace:
| Category | Terms |
|---|---|
| adrenergic receptor activity | 1 |
| G protein-coupled receptor signaling pathway | 1 |
| membrane | 1 |
| cell periphery | 1 |
| cellular anatomical structure | 1 |
Protein interactions and networks
STRING
536 interactions, top by confidence (×1000):
| Protein A | Protein B | Partner UniProt | Score |
|---|---|---|---|
| LMBRD2 | ATOSA | Q32MH5 | 556 |
| LMBRD2 | PIGO | Q8TEQ8 | 496 |
| LMBRD2 | DEPDC1B | Q8WUY9 | 493 |
| LMBRD2 | AP4E1 | Q9UPM8 | 487 |
| LMBRD2 | RAI2 | Q9Y5P3 | 479 |
| LMBRD2 | ZNF653 | Q96CK0 | 475 |
| LMBRD2 | RANBP3L | Q86VV4 | 472 |
| LMBRD2 | HMG20B | Q9P0W2 | 471 |
| LMBRD2 | TMEM267 | Q0VDI3 | 470 |
| LMBRD2 | BTBD2 | Q9BX70 | 466 |
| LMBRD2 | CCDC71 | Q8IV32 | 456 |
| LMBRD2 | CAPSL | Q8WWF8 | 456 |
| LMBRD2 | RSL24D1 | Q9UHA3 | 450 |
| LMBRD2 | SLC39A5 | Q6ZMH5 | 444 |
| LMBRD2 | NADK2 | Q4G0N4 | 436 |
IntAct
89 interactions, top by confidence:
| A | B | Type | Score |
|---|---|---|---|
| CFTR | ESYT2 | psi-mi:“MI:0914”(association) | 0.710 |
| NIPAL1 | ESYT2 | psi-mi:“MI:0914”(association) | 0.640 |
| HTR2C | KLRG2 | psi-mi:“MI:0914”(association) | 0.530 |
| LPAR4 | POTEF | psi-mi:“MI:0914”(association) | 0.530 |
| SLC2A5 | RBFOX3 | psi-mi:“MI:0914”(association) | 0.530 |
| SPACA1 | GOLIM4 | psi-mi:“MI:0914”(association) | 0.530 |
| CXCR4 | TMEM120B | psi-mi:“MI:0914”(association) | 0.530 |
| PDCD1 | RTL8C | psi-mi:“MI:0914”(association) | 0.530 |
| SLC22A15 | ZFPL1 | psi-mi:“MI:0914”(association) | 0.530 |
| LMBRD2 | AP2M1 | psi-mi:“MI:0915”(physical association) | 0.400 |
| SLC15A3 | psi-mi:“MI:0914”(association) | 0.350 | |
| UNC93B1 | psi-mi:“MI:0914”(association) | 0.350 | |
| ERGIC3 | TMEM223 | psi-mi:“MI:0914”(association) | 0.350 |
| C5AR2 | ILVBL | psi-mi:“MI:0914”(association) | 0.350 |
| VIPR2 | C15orf61 | psi-mi:“MI:0914”(association) | 0.350 |
| FPR2 | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
| TACR1 | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
| GRPR | GPR89A | psi-mi:“MI:0914”(association) | 0.350 |
| DCAF15 | ARNT | psi-mi:“MI:0914”(association) | 0.350 |
| OPRM1 | EXOC5 | psi-mi:“MI:0914”(association) | 0.350 |
| LPAR6 | DEGS1 | psi-mi:“MI:0914”(association) | 0.350 |
| GNAI2 | GNG7 | psi-mi:“MI:0914”(association) | 0.350 |
| incE | STX7 | psi-mi:“MI:0914”(association) | 0.350 |
| P | psi-mi:“MI:0914”(association) | 0.350 | |
| DENND11 | psi-mi:“MI:0914”(association) | 0.350 | |
| M | DENND11 | psi-mi:“MI:0914”(association) | 0.350 |
BioGRID (101): LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS), LMBRD2 (Affinity Capture-MS)
ESM2 similar proteins: A0JPH4, A2AHL1, A8DZH4, D3ZWZ9, E7FFT2, F1QFU0, F1QZE9, P48763, P50482, P86044, Q28CV2, Q32NZ6, Q3TPR7, Q3ZAS0, Q4R7U0, Q4V8U5, Q5F3F5, Q5M7W4, Q5RH73, Q5YCC5, Q5ZKN3, Q68DH5, Q6GQE1, Q6P4P2, Q6UXY8, Q7L1W4, Q7Z2W7, Q7Z402, Q7ZYA0, Q810F5, Q8BH79, Q8C428, Q8C561, Q8CB19, Q8IZK6, Q8N3S3, Q8R455, Q8R4D5, Q8R4P4, Q8R4P5
Diamond homologs: Q18695, Q29BL9, Q5F3F5, Q61ZW5, Q68DH5, Q6P4P2, Q7ZYA0, Q8C561, Q8MRQ4, Q54Q92, Q54TM2
SIGNOR signaling
0 interactions.
Enriched among interaction partners
Reactome pathways and GO biological processes over-represented among this gene’s 106 IntAct physical interaction partners (hypergeometric vs the genome-wide background, BH-FDR, gene-set size 15–500, ranked by fold). A functional readout of the neighbourhood — distinct from this gene’s own memberships above, and biased toward well-studied / hub proteins, so read it as themes rather than proof.
Reactome pathways:
| Pathway | Partners | Fold | FDR |
|---|---|---|---|
| G alpha (q) signalling events | 13 | 11.7× | 1e-08 |
| Class A/1 (Rhodopsin-like receptors) | 8 | 9.3× | 1e-04 |
| Peptide ligand-binding receptors | 7 | 8.1× | 9e-04 |
| GPCR ligand binding | 8 | 8.0× | 3e-04 |
| G alpha (i) signalling events | 12 | 7.3× | 8e-06 |
| SLC-mediated transmembrane transport | 7 | 6.5× | 3e-03 |
| Signaling by GPCR | 8 | 5.0× | 5e-03 |
GO biological processes:
| GO term | Partners | Fold | FDR |
|---|---|---|---|
| adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway | 8 | 19.4× | 1e-06 |
| phospholipase C-activating G protein-coupled receptor signaling pathway | 11 | 16.1× | 4e-08 |
| positive regulation of cytosolic calcium ion concentration | 8 | 10.4× | 1e-04 |
| chemotaxis | 6 | 9.1× | 4e-03 |
| adenylate cyclase-activating G protein-coupled receptor signaling pathway | 7 | 8.8× | 1e-03 |
| G protein-coupled receptor signaling pathway | 16 | 6.4× | 8e-07 |
Disease & clinical
Clinical variants and AI predictions
ClinVar
159 variants total. Per-class counts are floors (≥ shown; pagination cap):
| Classification | Count (floor) |
|---|---|
| Pathogenic | 0 |
| Likely pathogenic | 8 |
| Uncertain significance | 114 |
| Likely benign | 9 |
| Benign | 5 |
Top pathogenic / likely-pathogenic (8)
| Variant ID | HGVS | Classification |
|---|---|---|
| 1699429 | NM_001007527.2(LMBRD2):c.149T>C (p.Phe50Ser) | Likely pathogenic |
| 1701877 | NM_001007527.2(LMBRD2):c.1460C>T (p.Pro487Leu) | Likely pathogenic |
| 3342609 | NM_001007527.2(LMBRD2):c.976C>G (p.Gln326Glu) | Likely pathogenic |
| 3369230 | NM_001007527.2(LMBRD2):c.1568C>G (p.Ser523Cys) | Likely pathogenic |
| 3662550 | NM_001007527.2(LMBRD2):c.840G>T (p.Gln280His) | Likely pathogenic |
| 3777058 | NM_001007527.2(LMBRD2):c.1428C>G (p.Phe476Leu) | Likely pathogenic |
| 4291913 | NM_001007527.2(LMBRD2):c.341T>A (p.Val114Glu) | Likely pathogenic |
| 982396 | NM_001007527.2(LMBRD2):c.1447C>T (p.Arg483Cys) | Likely pathogenic |
SpliceAI
3011 predictions. Top by Δscore:
| Variant | Effect | Δscore |
|---|---|---|
| 5:36102250:T:TA | donor_gain | 1.0000 |
| 5:36105063:CTTA:C | donor_loss | 1.0000 |
| 5:36105064:TTAC:T | donor_loss | 1.0000 |
| 5:36105065:TA:T | donor_loss | 1.0000 |
| 5:36105066:A:AC | donor_gain | 1.0000 |
| 5:36105066:A:AG | donor_loss | 1.0000 |
| 5:36105066:ACCTT:A | donor_gain | 1.0000 |
| 5:36105067:C:CC | donor_gain | 1.0000 |
| 5:36105067:CCTT:C | donor_gain | 1.0000 |
| 5:36105067:CCTTC:C | donor_gain | 1.0000 |
| 5:36105070:T:A | donor_gain | 1.0000 |
| 5:36105193:TGCAG:T | acceptor_gain | 1.0000 |
| 5:36105194:GCAG:G | acceptor_gain | 1.0000 |
| 5:36105195:CAG:C | acceptor_gain | 1.0000 |
| 5:36105195:CAGC:C | acceptor_gain | 1.0000 |
| 5:36105196:AG:A | acceptor_gain | 1.0000 |
| 5:36105197:GC:G | acceptor_loss | 1.0000 |
| 5:36105198:C:A | acceptor_loss | 1.0000 |
| 5:36105198:C:CC | acceptor_gain | 1.0000 |
| 5:36105199:T:G | acceptor_loss | 1.0000 |
| 5:36108528:A:AC | donor_gain | 1.0000 |
| 5:36108529:C:CC | donor_gain | 1.0000 |
| 5:36108530:TTA:T | donor_loss | 1.0000 |
| 5:36108531:TA:T | donor_loss | 1.0000 |
| 5:36108532:A:AC | donor_gain | 1.0000 |
| 5:36108532:A:AT | donor_loss | 1.0000 |
| 5:36108533:C:CA | donor_gain | 1.0000 |
| 5:36108533:CA:C | donor_gain | 1.0000 |
| 5:36108533:CAA:C | donor_gain | 1.0000 |
| 5:36108533:CAACG:C | donor_gain | 1.0000 |
AlphaMissense
4593 scored. Top likely-pathogenic:
| Variant | Protein change | am_pathogenicity |
|---|---|---|
| 5:36115088:A:G | L490P | 1.000 |
| 5:36124201:A:T | I271K | 1.000 |
| 5:36136476:C:G | G194R | 1.000 |
| 5:36136479:A:G | W193R | 1.000 |
| 5:36136479:A:T | W193R | 1.000 |
| 5:36136490:G:T | A189D | 1.000 |
| 5:36141144:A:G | W111R | 1.000 |
| 5:36141144:A:T | W111R | 1.000 |
| 5:36114463:G:T | P534H | 0.999 |
| 5:36115084:A:C | N491K | 0.999 |
| 5:36115084:A:T | N491K | 0.999 |
| 5:36115090:A:C | C489W | 0.999 |
| 5:36115092:A:G | C489R | 0.999 |
| 5:36115106:A:C | L484W | 0.999 |
| 5:36115109:C:G | R483P | 0.999 |
| 5:36115110:G:C | R483G | 0.999 |
| 5:36115110:G:T | R483S | 0.999 |
| 5:36115111:G:C | C482W | 0.999 |
| 5:36116465:A:C | S477R | 0.999 |
| 5:36116465:A:T | S477R | 0.999 |
| 5:36116467:T:G | S477R | 0.999 |
| 5:36116468:G:C | F476L | 0.999 |
| 5:36116468:G:T | F476L | 0.999 |
| 5:36116470:A:G | F476L | 0.999 |
| 5:36116475:A:G | L474P | 0.999 |
| 5:36116477:G:C | S473R | 0.999 |
| 5:36116477:G:T | S473R | 0.999 |
| 5:36116479:T:G | S473R | 0.999 |
| 5:36116490:G:A | T469I | 0.999 |
| 5:36116587:A:G | C437R | 0.999 |
dbSNP variants (sampled 300 via entrez): RS1000044719 (5:36117879 G>A), RS1000139652 (5:36152468 T>C,G), RS1000149901 (5:36103738 T>C), RS1000161397 (5:36109741 A>G,T), RS1000183908 (5:36131397 T>C), RS1000381408 (5:36139165 CT>C), RS1000391348 (5:36102115 T>A,C,G), RS1000488180 (5:36151990 A>G,T), RS1000535324 (5:36116869 T>A), RS1000605023 (5:36131015 C>T), RS1000629331 (5:36138677 G>A), RS1000659783 (5:36123742 T>A,C), RS1000703334 (5:36110129 A>G), RS1000901323 (5:36131119 G>A), RS1000913105 (5:36144852 A>G)
Disease associations
OMIM: gene MIM:619490 | disease phenotypes: MIM:619694, MIM:617493
GenCC curated gene-disease
| Disease | Classification | Inheritance |
|---|---|---|
| developmental delay with variable neurologic and brain abnormalities | Strong | Autosomal dominant |
| neurodevelopmental disorder with microcephaly and dysmorphic facies | Moderate | Autosomal dominant |
| complex neurodevelopmental disorder | No Known Disease Relationship | Autosomal dominant |
Mondo (5): neurodevelopmental disorder (MONDO:0700092), developmental delay with variable neurologic and brain abnormalities (MONDO:0859218), neurodevelopmental disorder with involuntary movements (MONDO:0060491), complex neurodevelopmental disorder (MONDO:0100038), neurodevelopmental disorder with microcephaly and dysmorphic facies (MONDO:0032942)
Orphanet (1): GNAO1-related developmental delay-seizures-movement disorder spectrum (Orphanet:592564)
HPO phenotypes
34 total (30 of 34 shown, HPO-id order):
| HPO | Term |
|---|---|
| HP:0000006 | Autosomal dominant inheritance |
| HP:0000252 | Microcephaly |
| HP:0000336 | Prominent supraorbital ridges |
| HP:0000347 | Micrognathia |
| HP:0000400 | Macrotia |
| HP:0000445 | Wide nose |
| HP:0000463 | Anteverted nares |
| HP:0000483 | Astigmatism |
| HP:0000501 | Glaucoma |
| HP:0000518 | Cataract |
| HP:0000540 | Hypermetropia |
| HP:0000568 | Microphthalmia |
| HP:0000582 | Upslanted palpebral fissure |
| HP:0000637 | Long palpebral fissure |
| HP:0000639 | Nystagmus |
| HP:0000646 | Amblyopia |
| HP:0000687 | Widely spaced teeth |
| HP:0000691 | Microdontia |
| HP:0000750 | Delayed speech and language development |
| HP:0000767 | Pectus excavatum |
| HP:0001137 | Alternating esotropia |
| HP:0001250 | Seizure |
| HP:0001257 | Spasticity |
| HP:0001263 | Global developmental delay |
| HP:0001270 | Motor delay |
| HP:0002057 | Prominent glabella |
| HP:0002282 | Gray matter heterotopia |
| HP:0002967 | Cubitus valgus |
| HP:0003593 | Infantile onset |
| HP:0005338 | Sparse lateral eyebrow |
GWAS associations
2 associations (top):
| Study | Trait | p-value |
|---|---|---|
| GCST000323_9 | Response to treatment for acute lymphoblastic leukemia | 7.000000e-06 |
| GCST006804_181 | Red cell distribution width | 3.000000e-08 |
EFO canonical traits (1, from GWAS)
| EFO ID | Trait name |
|---|---|
| EFO:0009188 | Red cell distribution width |
MeSH disease descriptors (1)
| Descriptor | Name | Tree numbers |
|---|---|---|
| D065886 | Neurodevelopmental Disorders | F03.625 |
Drugs & pharmacology
Drug and pharmacology data
Is drug target: no
PharmGKB: 1 entry (VIP=true, CPIC=false)
CTD chemical–gene interactions
22 total (human), top 22 by PubMed support.
| Chemical | Actions (top 5) | PubMed papers |
|---|---|---|
| Aflatoxin B1 | affects expression, decreases methylation | 2 |
| triphenyl phosphate | affects expression | 1 |
| bisphenol A | decreases methylation | 1 |
| sodium arsenite | increases expression | 1 |
| perfluorooctane sulfonic acid | decreases expression | 1 |
| monomethylarsonous acid | increases expression | 1 |
| abrine | decreases expression | 1 |
| jinfukang | decreases expression | 1 |
| Resveratrol | affects cotreatment, increases expression | 1 |
| Sunitinib | increases expression | 1 |
| Benzo(a)pyrene | decreases expression | 1 |
| Ethyl Methanesulfonate | increases expression | 1 |
| Formaldehyde | increases expression | 1 |
| Methyl Methanesulfonate | increases expression | 1 |
| Plant Extracts | affects cotreatment, increases expression | 1 |
| Thimerosal | increases expression | 1 |
| Tobacco Smoke Pollution | increases expression | 1 |
| Urethane | decreases expression | 1 |
| Valproic Acid | increases expression | 1 |
| Cyclosporine | increases expression | 1 |
| Okadaic Acid | decreases expression | 1 |
| Lactic Acid | decreases expression | 1 |
Clinical trials (associated diseases)
204 trials via MONDO — disease-level, not drug-specific.
| Trial | Phase | Status | Title |
|---|---|---|---|
| NCT04586348 | PHASE4 | UNKNOWN | Prenatal Iodine Supplementation and Early Childhood Neurodevelopment |
| NCT04873115 | PHASE4 | UNKNOWN | Double-blind, Placebo-controlled, Randomized Clinical Trial Comparing the Efficacy and Safety of Sialanar Plus orAl rehabiLitation Against Placebo Plus Oral Rehabilitation for chIldren and Adolescents With seVere Sialorrhoea and Neurodisabilties, |
| NCT02559102 | PHASE3 | COMPLETED | Dexmedetomidine Sedation Versus General Anaesthesia for Inguinal Hernia Surgery in Infants |
| NCT02757079 | PHASE3 | COMPLETED | Study of the Efficacy and Safety of NPC-15 for Sleep Disorders of Children With Neurodevelopmental Disorders |
| NCT06915480 | PHASE3 | RECRUITING | Reducing Missed Appointments |
| NCT07377032 | PHASE3 | RECRUITING | TAP-GRIN: Interventional Study on Patients With GRIN-related Neurodevelopmental Disorders |
| NCT02909959 | PHASE2 | COMPLETED | Sulforaphane for the Treatment of Young Men With Autism Spectrum Disorder |
| NCT06081348 | PHASE2 | RECRUITING | Sertraline vs. Placebo in the Treatment of Anxiety in Children and AdoLescents With NeurodevelopMental Disorders |
| NCT06352372 | PHASE2 | COMPLETED | Safety and Efficacy of tPBM for Epileptiform Activity in Autism |
| NCT00503191 | PHASE1 | COMPLETED | NeuroModulation Technique Treatment of Autism |
| NCT04475848 | PHASE1 | COMPLETED | A Study to Investigate the Safety, Tolerability, Pharmacokinetics, Pharmacodynamics and Food Effect of RO6953958 in Healthy Participants |
| NCT06300398 | PHASE1 | COMPLETED | IAMA-6 Oral Dose Study in Healthy Adults |
| NCT06310681 | Not specified | COMPLETED | Pilot Testing of a Co-adapted Group Programme for Parents/Carers of Children With Complex Neurodisability |
| NCT07303049 | Not specified | NOT_YET_RECRUITING | Cognitive Benefit of Intensive Rehabilitation Using Rhythmic Music Training in Children With Complex Neurodevelopmental Disorder |
| NCT01783041 | PHASE2/PHASE3 | COMPLETED | Effect of Early L-Carnitine Supplementation on Neurodevelopmental Outcomes in Very Preterm Infants |
| NCT05767385 | PHASE2/PHASE3 | RECRUITING | Fetal Cerebrovascular Autoregulation in Congenital Heart Disease and Association With Neonatal Neurobehavior |
| NCT05675098 | EARLY_PHASE1 | NOT_YET_RECRUITING | Central Nervous System Stimulants and Physical Function in Children With Cerebral Palsy |
| NCT00783783 | Not specified | COMPLETED | CYP2D6 Pharmacogenetics in Risperidone-Treated Children |
| NCT01778504 | Not specified | RECRUITING | Studying Childhood-onset Behavioral, Psychiatric, and Developmental Disorders |
| NCT01850784 | Not specified | UNKNOWN | High Energy Formula Feeding in Infants With Congenital Heart Disease |
| NCT01922791 | Not specified | COMPLETED | Nutrition and Pregnancy Intervention Study |
| NCT01942525 | Not specified | UNKNOWN | Influence of Intrauterine Growth Restriction on Amplitude-integrated EEG in Preterm Infants |
| NCT02003170 | Not specified | COMPLETED | Etiology and Early Diagnosis of Neurodevelopmental Disorders |
| NCT02118649 | Not specified | ACTIVE_NOT_RECRUITING | Enhancing Behavior and Brain Response to Visual Targets Using a Computer Game |
| NCT02557191 | Not specified | TERMINATED | Biomarkers, Neurodevelopment and Preterm Infants |
| NCT02690675 | Not specified | COMPLETED | Iron Supplement Effect on Child Development |
| NCT02694003 | Not specified | COMPLETED | Better Nights, Better Days for Children With Neurodevelopment Disorders |
| NCT02792894 | Not specified | COMPLETED | Family Networks (FaNs) for Children With Developmental Disorders and Delays |
| NCT02871674 | Not specified | UNKNOWN | Good Night Project: Behavioural Sleep Interventions for Children With ADHD: A Randomised Controlled Trial |
| NCT02887157 | Not specified | COMPLETED | Analyzing Retinal Microanatomy in ROP |
| NCT02898298 | Not specified | COMPLETED | Positive Emotion Regulation Training in Children, Adolescents and Young Adults With and Without Developmental Disorder |
| NCT02912780 | Not specified | UNKNOWN | Introduction of Microsystems in a Level 3 Neonatal Intensive Care Unit |
| NCT03023293 | Not specified | COMPLETED | n-3 PUFAs, Irisin and Maternal Glucose Metabolism From Pregnancy to Postpartum |
| NCT03023644 | Not specified | COMPLETED | Improving Neurodevelopmental Outcomes in Children With Congenital Heart Disease: An Intervention Study |
| NCT03032991 | Not specified | UNKNOWN | Early Biomarkers of Neurodevelopment in Offspring of Diabetic Mothers |
| NCT03088189 | Not specified | TERMINATED | Effect of Parental Peri-conceptional Vitamin B12 Supplementation on Infant Neurocognitive Development in Offspring |
| NCT03096028 | Not specified | COMPLETED | Developmental Origins of Mental Health Disorders |
| NCT03148782 | Not specified | COMPLETED | Brain Plasticity Underlying Acquisition of New Organizational Skills in Children-R61 Phase |
| NCT03172104 | Not specified | COMPLETED | Neurobehavioural Development of Infants Born <30 Weeks Gestational Age Between Birth and Five Years of Age |
| NCT03222375 | Not specified | RECRUITING | SQUED™ Series 28.1 Home-use and Treatment of Autowave Reverberator of Autism |
Related Atlas pages
- Associated diseases: developmental delay with variable neurologic and brain abnormalities, complex neurodevelopmental disorder, neurodevelopmental disorder with microcephaly and dysmorphic facies
- Disease cohort memberships (association, not causation — diseases whose associated-gene cohort lists this gene; a subset are also under Associated diseases): acute lymphoblastic leukemia, complex neurodevelopmental disorder, developmental delay with variable neurologic and brain abnormalities, neurodevelopmental disorder with involuntary movements, neurodevelopmental disorder with microcephaly and dysmorphic facies