LNCATV

Summary

LNCATV (lncRNA negative regulator of antiviral signaling, HGNC:54478) is a long non-coding RNA gene on chromosome 1q42.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54478
Approved symbol	LNCATV
Name	lncRNA negative regulator of antiviral signaling
Location	1q42.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000238005
Ensembl biotype	lncRNA
Entrez	101927851
RNAcentral	URS00007E4015 — lncRNA, 905 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000418557, ENST00000423175, ENST00000423988, ENST00000451766, ENST00000458044, ENST00000652109, ENST00000653154, ENST00000653723, ENST00000653884, ENST00000654767, ENST00000656076, ENST00000659687, ENST00000662592, ENST00000662989, ENST00000666699, ENST00000668743, ENST00000693204

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418557 — 4 exons

Exon	Start	End
ENSE00001599074	234957342	234957521
ENSE00001616535	234963767	234963999
ENSE00001663242	234957679	234958078
ENSE00001687018	234959841	234959916

Expression profiles

Bgee: expression breadth ubiquitous, 158 present calls, max score 83.81.

Top tissues by expression

248 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.81	gold quality
mucosa of transverse colon	UBERON:0004991	80.05	gold quality
right lobe of liver	UBERON:0001114	79.25	gold quality
blood	UBERON:0000178	79.04	gold quality
bone marrow cell	CL:0002092	77.60	gold quality
sural nerve	UBERON:0015488	77.31	gold quality
colonic epithelium	UBERON:0000397	75.28	gold quality
leukocyte	CL:0000738	74.99	gold quality
monocyte	CL:0000576	74.87	gold quality
granulocyte	CL:0000094	70.96	gold quality
liver	UBERON:0002107	70.59	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.19	gold quality
rectum	UBERON:0001052	69.62	gold quality
left testis	UBERON:0004533	69.19	gold quality
vermiform appendix	UBERON:0001154	68.97	gold quality
descending thoracic aorta	UBERON:0002345	67.93	gold quality
right testis	UBERON:0004534	67.66	gold quality
testis	UBERON:0000473	67.59	gold quality
right adrenal gland cortex	UBERON:0035827	66.56	gold quality
stromal cell of endometrium	CL:0002255	66.44	gold quality
right uterine tube	UBERON:0001302	66.00	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	65.36	gold quality
spleen	UBERON:0002106	65.27	gold quality
oviduct epithelium	UBERON:0004804	65.21	gold quality
right lung	UBERON:0002167	65.18	gold quality
transverse colon	UBERON:0001157	65.13	gold quality
gall bladder	UBERON:0002110	64.43	gold quality
ascending aorta	UBERON:0001496	64.30	gold quality
thoracic aorta	UBERON:0001515	64.24	gold quality
sperm	CL:0000019	64.00	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.41

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.