LNCHR1

Summary

LNCHR1 (lncRNA induced by HCV, regulator of SREBF1, HGNC:56254) is a long non-coding RNA gene on chromosome 12q22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:56254
Approved symbol	LNCHR1
Name	lncRNA induced by HCV, regulator of SREBF1
Location	12q22
Locus type	RNA, long non-coding
Status	Approved
Aliases	lncHR1
Ensembl gene	ENSG00000257400
Ensembl biotype	lncRNA
Entrez	125775239
RNAcentral	URS000038DCB1 — lncRNA, 420 nt, 2 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000549532

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000549532 — 2 exons

Exon	Start	End
ENSE00002336032	94491546	94491927
ENSE00002426450	94496405	94496442

Expression profiles

Bgee: expression breadth broad, 67 present calls, max score 91.74.

Top tissues by expression

67 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.74	gold quality
bone marrow	UBERON:0002371	60.81	gold quality
adult mammalian kidney	UBERON:0000082	60.35	gold quality
prefrontal cortex	UBERON:0000451	59.16	gold quality
monocyte	CL:0000576	58.04	gold quality
blood	UBERON:0000178	56.51	gold quality
cortex of kidney	UBERON:0001225	55.12	gold quality
superior frontal gyrus	UBERON:0002661	53.65	gold quality
gastrocnemius	UBERON:0001388	52.71	gold quality
corpus callosum	UBERON:0002336	51.86	silver quality
islet of Langerhans	UBERON:0000006	51.28	gold quality
tibial artery	UBERON:0007610	51.00	gold quality
frontal cortex	UBERON:0001870	48.75	gold quality
body of uterus	UBERON:0009853	48.73	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	48.59	gold quality
body of pancreas	UBERON:0001150	47.14	gold quality
adrenal tissue	UBERON:0018303	46.87	silver quality
left uterine tube	UBERON:0001303	46.86	gold quality
endometrium	UBERON:0001295	46.81	silver quality
heart left ventricle	UBERON:0002084	46.58	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.42	gold quality
cerebral cortex	UBERON:0000956	46.14	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	46.00	gold quality
cerebellar hemisphere	UBERON:0002245	45.95	silver quality
ascending aorta	UBERON:0001496	45.40	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.91	gold quality
substantia nigra	UBERON:0002038	44.84	gold quality
body of stomach	UBERON:0001161	44.65	silver quality
stomach	UBERON:0000945	44.52	silver quality
right atrium auricular region	UBERON:0006631	44.36	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.65

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.